2024
Improved species assignments across the entire Anopheles genus using targeted sequencing
Boddé M, Makunin A, Teltscher F, Akorli J, Andoh N, Bei A, Chaumeau V, Desamours I, Ekpo U, Govella N, Kayondo J, Kobylinski K, Ngom E, Niang E, Okumu F, Omitola O, Ponlawat A, Rakotomanga M, Rasolonjatovoniaina M, Ayala D, Lawniczak M. Improved species assignments across the entire Anopheles genus using targeted sequencing. Frontiers In Genetics 2024, 15: 1456644. PMID: 39364005, PMCID: PMC11446804, DOI: 10.3389/fgene.2024.1456644.Peer-Reviewed Original ResearchSpecies assignmentSequence dataAmplicon sequencing dataSpecies population structureAccurate species identificationSamples to species levelNuclear lociPopulation structureAmplicon panelSpecies levelSpecies identificationTarget sequenceAnopheles genusGenusSpeciesAmpliconsComparison of samplesSequenceLociMosquitoesIncreased powerMadagascarControl measures
2023
A Variational Autoencoder-Feed Forward Networks (VAE-FNN) Model for Classifying DNA Barcodes
Yadav A, S D, Oviya I, Raja K. A Variational Autoencoder-Feed Forward Networks (VAE-FNN) Model for Classifying DNA Barcodes. 2023, 00: 1-5. DOI: 10.1109/icaeeci58247.2023.10370839.Peer-Reviewed Original ResearchDNA barcodingDNA barcode-based species identificationKnowledge of species diversitySpecies categorizationDNA barcoding approachVariational auto-encoderDeep learning modelsBarcoding approachLife kingdomsSpecies diversitySpecies identificationGene sectionsAuto-encoderTaxonomic techniquesBarcodingDNAForward networkNeural network workflowEcological functionsAverage accuracyLearning modelsSpeciesNetwork workflowMatKRbcL
2019
Molecular and taxonomic analyses in troglobiotic Alpioniscus (Illyrionethes) species from the Dinaric Karst (Isopoda: Trichoniscidae)
Bedek J, Taiti S, Bilandžija H, Ristori E, Baratti M. Molecular and taxonomic analyses in troglobiotic Alpioniscus (Illyrionethes) species from the Dinaric Karst (Isopoda: Trichoniscidae). Zoological Journal Of The Linnean Society 2019, 187: 539-584. DOI: 10.1093/zoolinnean/zlz056.Peer-Reviewed Original ResearchNominal speciesNuclear gene fragmentsFuture species identificationDinaric karstMost nominal speciesNew morphological charactersSpecies richnessDetailed morphological analysisWidespread taxaDistinct lineagesPhylogenetic methodsMorphological charactersTerrestrial isopodsGene fragmentsTaxonomic analysisDNA fragmentsSpecies identificationDifferent speciesBody part ratiosTaxaMolecular analysisSpeciesMorphological analysisTroglobiontsFragments
2005
Genetic distinction of American and European mink (Mustela vison and M. lutreola) and European polecat (M. putorius) hair samples by detection of a species‐specific SINE and a RFLP assay
López‐Giráldez F, Gómez‐Moliner B, Marmi J, Domingo‐Roura X. Genetic distinction of American and European mink (Mustela vison and M. lutreola) and European polecat (M. putorius) hair samples by detection of a species‐specific SINE and a RFLP assay. Journal Of Zoology 2005, 265: 405-410. DOI: 10.1017/s0952836905006497.Peer-Reviewed Original ResearchGenetic distinctionEuropean minkAmerican mink M. visonAmerican minkEuropean mink Mustela lutreolaPCR productsReliable species identificationMustela sppReliable molecular methodMustelid speciesM. putoriusNon-invasive samplingSpecies identificationEuropean polecatLong PCR productsMolecular techniquesMustela lutreolaConservation programsM. visonRestriction patternsSpeciesMolecular methodsHair rootsMinkAgarose gel
2004
Phylogenetics: Taxonomy and the microsporidia as derived fungi
Vossbrinck C, Andreadis T, Weiss L. Phylogenetics: Taxonomy and the microsporidia as derived fungi. World Class Parasites 2004, 9: 189-213. DOI: 10.1007/978-1-4020-7846-0_11.Peer-Reviewed Original ResearchMolecular phylogenyMolecular phylogenetic analysisUncertain taxonomic statusRibosomal RNA genesEukaryotic intracellular parasitesTraditional phylogenyAnimal phylaRNA genesImportant insectsTaxonomic statusPhylogenetic analysisNucleotide sequenceSpecies identificationPhylogenyHuman diseasesMolecular biologyIntracellular parasitesMicrosporidia speciesMicrosporidiaOrganismsOpportunistic pathogenNosemaGenusFungiProtozoa
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