2023
Complete Genome Assembly and Annotation of Escherichia coli Bacteriophage 107
Schwarz J, Chan B, Turner P, Burmeister A. Complete Genome Assembly and Annotation of Escherichia coli Bacteriophage 107. Microbiology Resource Announcements 2023, 12: e00106-23. PMID: 37191527, PMCID: PMC10281100, DOI: 10.1128/mra.00106-23.Peer-Reviewed Original Research
2022
Assembly and Annotation of Escherichia coli Bacteriophage U115
An W, Emsbo C, Frey E, Hu V, Jones A, Latif N, Perrilli M, Reillo K, Schwarz J, Strasner S, Theroux A, Vargas L, Turner P, Burmeister A. Assembly and Annotation of Escherichia coli Bacteriophage U115. Microbiology Resource Announcements 2022, 11: e00949-21. PMID: 35175109, PMCID: PMC8852279, DOI: 10.1128/mra.00949-21.Peer-Reviewed Original Research
2013
Genomically Recoded Organisms Expand Biological Functions
Lajoie MJ, Rovner AJ, Goodman DB, Aerni HR, Haimovich AD, Kuznetsov G, Mercer JA, Wang HH, Carr PA, Mosberg JA, Rohland N, Schultz PG, Jacobson JM, Rinehart J, Church GM, Isaacs FJ. Genomically Recoded Organisms Expand Biological Functions. Science 2013, 342: 357-360. PMID: 24136966, PMCID: PMC4924538, DOI: 10.1126/science.1241459.Peer-Reviewed Original ResearchConceptsNew genetic codesRelease factor 1UAG stop codonNonstandard amino acidsEscherichia coli MG1655UAA codonGenetic codeColi MG1655Biological functionsStop codonChemical diversityT7 bacteriophageAmino acidsFactor 1CodonMG1655OrganismsProteinDiversityDeletionBacteriophagesViral resistanceTranslation functionGROVivo
2009
Bacteriophage Ecology
Abedon S, Duffy S, Turner P. Bacteriophage Ecology. 2009, 42-57. DOI: 10.1016/b978-012373944-5.00022-5.Peer-Reviewed Original ResearchPhage ecologyEcosystem ecologyNutrient cyclingCommunity ecologyAbiotic componentsTerrestrial environmentsPopulation ecologyEcologyBacteriophage ecologyBiological populationsEnvironmental microbiologyPhage interactionsEnergy flowHost bacteriaPhagesBacteriaHabitatsEcologistsCyclingEukaryotesCommunityBacteriophagesImpactInteractionEnvironment
2006
Interaction of packaging motor with the polymerase complex of dsRNA bacteriophage
Lísal J, Kainov DE, Lam TT, Emmett MR, Wei H, Gottlieb P, Marshall AG, Tuma R. Interaction of packaging motor with the polymerase complex of dsRNA bacteriophage. Virology 2006, 351: 73-79. PMID: 16643976, DOI: 10.1016/j.virol.2006.03.025.Peer-Reviewed Original ResearchConceptsC-terminal faceP4 hexamersDsRNA bacteriophagesPackaging motorPolymerase complexHydrogen-deuterium exchangeSubunit interfaceProcapsidRNA loadingBiochemical studiesMolecular motorsEmpty capsidsHexamerViral capsidCapsidMass spectrometryGenomeDsRNAProcessivityBacteriophagesInteractionRegulationAssociates
2005
Widespread genetic exchange among terrestrial bacteriophages
Silander OK, Weinreich DM, Wright KM, O'Keefe KJ, Rang CU, Turner PE, Chao L. Widespread genetic exchange among terrestrial bacteriophages. Proceedings Of The National Academy Of Sciences Of The United States Of America 2005, 102: 19009-19014. PMID: 16365305, PMCID: PMC1323146, DOI: 10.1073/pnas.0503074102.Peer-Reviewed Original ResearchConceptsGenetic exchangeLinkage disequilibriumBiological species conceptWidespread genetic exchangeGenomic mutation rateFrequent genetic reassortmentSingle host cellGroup of phagesBiogeography studiesSexual populationsGenetic structureSpecies conceptWild populationsNucleotide divergenceFrequent reassortmentDsRNA genomeBacteriophage populationsDegenerate sitesRecombination eventsNumerical dominanceMutation rateHost cellsGenetic reassortmentUnrelated individualsBacteriophages
1974
Specific recognition of the isolated R17 replicase initiator region by R17 coat protein
STEITZ J. Specific recognition of the isolated R17 replicase initiator region by R17 coat protein. Nature 1974, 248: 223-225. PMID: 4819415, DOI: 10.1038/248223a0.Peer-Reviewed Original Research
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