Download the Latest Stable Version of BioImage Suite
From this webpage you can download the latest stable version of BioImage Suite (3.01 -- svn repository version 6346). Last updated March 17, 2011.
Beta Version
- For the 3.2 beta version (June 13, 2012) see the beta download page.
Previous Versions
- To download the previous 2.6.1 version go to the this download page.
- MS-Windows
- Linux 32-bit
- Linux 64-bit
- Mac OS X
- Source Code
BioImage Suite 3.01 Installation
Microsoft Windows 2000/XP/VISTA/7
You may need to install the Windows VS 2008 redistributable package first prior to installing the BioImage Suite, especially on older versions of (e.g. XP).
- Download Link: Windows (VS 2008) Complete Version (Default)
Brain Extraction Tool
BioImage Suite 2.x/3.x makes use of the FSL Brain Extraction Tool (BET). Unfortunately there are no native versions of FSL for windows. To alleviate this problem we provide a set of custom compiled BET binaries for windows. These are released under the same license as FSL itself, i.e. free for non commercial use
To use these:
- Download this zip file.
- Unzip it somewhere in your path, e.g. c:\yale\bioimagesuite_extra\bin. A correct installation should have a file called bet.exe (and others of similar name) in c:\yale\bioimagesuite_extra\bin. BioImage Suite will detect the presence of this automatically.
Follow this link to obtain source code for this bet package. There is also a first beta version of a built-in version of BET under image processing/skull stripping.