2023
Variant-specific introduction and dispersal dynamics of SARS-CoV-2 in New York City – from Alpha to Omicron
Dellicour S, Hong S, Hill V, Dimartino D, Marier C, Zappile P, Harkins G, Lemey P, Baele G, Duerr R, Heguy A. Variant-specific introduction and dispersal dynamics of SARS-CoV-2 in New York City – from Alpha to Omicron. PLOS Pathogens 2023, 19: e1011348. PMID: 37071654, PMCID: PMC10180688, DOI: 10.1371/journal.ppat.1011348.Peer-Reviewed Original Research
2020
Genomic Epidemiology of SARS-CoV-2 in Guangdong Province, China
Lu J, du Plessis L, Liu Z, Hill V, Kang M, Lin H, Sun J, François S, Kraemer M, Faria N, McCrone J, Peng J, Xiong Q, Yuan R, Zeng L, Zhou P, Liang C, Yi L, Liu J, Xiao J, Hu J, Liu T, Ma W, Li W, Su J, Zheng H, Peng B, Fang S, Su W, Li K, Sun R, Bai R, Tang X, Liang M, Quick J, Song T, Rambaut A, Loman N, Raghwani J, Pybus O, Ke C. Genomic Epidemiology of SARS-CoV-2 in Guangdong Province, China. Cell 2020, 181: 997-1003.e9. PMID: 32359424, PMCID: PMC7192124, DOI: 10.1016/j.cell.2020.04.023.Peer-Reviewed Original ResearchConceptsGenetic diversity of SARS-CoV-2Combination of metagenomic sequencingDiversity of SARS-CoV-2Genomic epidemiology of SARS-CoV-2Genetic diversityAmplicon approachPhylogenetic analysisMetagenomic sequencingPhylogenetic clusteringChina’s most populous province,Genetic variationEpidemiology of SARS-CoV-2Genomic epidemiologyIndependent introductionsSARS-CoV-2Molecular epidemiologyMolecular surveillanceGenomeLocal transmission chainsTransmission chainCentral ChinaSequenceSARS-CoV-2 infectionGuangdong Province