2009
Integrating Sequencing Technologies in Personal Genomics: Optimal Low Cost Reconstruction of Structural Variants
Du J, Bjornson RD, Zhang ZD, Kong Y, Snyder M, Gerstein MB. Integrating Sequencing Technologies in Personal Genomics: Optimal Low Cost Reconstruction of Structural Variants. PLOS Computational Biology 2009, 5: e1000432. PMID: 19593373, PMCID: PMC2700963, DOI: 10.1371/journal.pcbi.1000432.Peer-Reviewed Original ResearchConceptsDifferent read lengthsDifferent technologiesSemi-realistic simulationComputational complexityMaximum accuracyAssembly algorithmReconstruction efficiencySimulation toolboxPersonal genomicsAccurate detectionLow costChallenging stepTechnologyCostAlgorithmAccurate assemblyComplexitySmall enough scalesReconstructionGoalIndividual genomesCanonical problemImportant goalToolboxSimulations
2003
A Protein Interaction Map of Drosophila melanogaster
Giot L, Bader JS, Brouwer C, Chaudhuri A, Kuang B, Li Y, Hao YL, Ooi CE, Godwin B, Vitols E, Vijayadamodar G, Pochart P, Machineni H, Welsh M, Kong Y, Zerhusen B, Malcolm R, Varrone Z, Collis A, Minto M, Burgess S, McDaniel L, Stimpson E, Spriggs F, Williams J, Neurath K, Ioime N, Agee M, Voss E, Furtak K, Renzulli R, Aanensen N, Carrolla S, Bickelhaupt E, Lazovatsky Y, DaSilva A, Zhong J, Stanyon CA, Finley RL, White KP, Braverman M, Jarvie T, Gold S, Leach M, Knight J, Shimkets RA, McKenna MP, Chant J, Rothberg JM. A Protein Interaction Map of Drosophila melanogaster. Science 2003, 302: 1727-1736. PMID: 14605208, DOI: 10.1126/science.1090289.Peer-Reviewed Original ResearchMeSH KeywordsAnimalsCalciumCell CycleCell DifferentiationCloning, MolecularComputational BiologyDNA, ComplementaryDrosophila melanogasterDrosophila ProteinsErbB ReceptorsGenes, InsectImmunity, InnateMathematicsModels, StatisticalPhotoreceptor Cells, InvertebrateProtein BindingProtein Interaction MappingProteomeRNA SplicingRNA, MessengerSignal TransductionTranscription, GeneticTwo-Hybrid System TechniquesConceptsProtein interaction mapsDrosophila melanogasterDraft mapComplementary DNA librarySystems biology modelingHigh-confidence mapMulticellular organismsFly proteomeMultiprotein complexesDNA libraryInteraction mapPathway componentsLevels of organizationKnown pathwaysExtended pathwaysHuman biologyMelanogasterModel systemProteinPathwayProteomeComputational methodsTranscriptsOrganismsBiology