Featured Publications
From Data to Wisdom: Biomedical Knowledge Graphs for Real-World Data Insights
Hänsel K, Dudgeon S, Cheung K, Durant T, Schulz W. From Data to Wisdom: Biomedical Knowledge Graphs for Real-World Data Insights. Journal Of Medical Systems 2023, 47: 65. PMID: 37195430, PMCID: PMC10191934, DOI: 10.1007/s10916-023-01951-2.Commentaries, Editorials and LettersConceptsKnowledge graphReal-world dataGraph modelBiomedical data integrationGraph data modelIntegrated Knowledge GraphBiomedical knowledge graphsElectronic health recordsData integrationData insightsData modelInsight generationBiomedical informationHealth recordsArt researchGraphNovel approachCombination of dataDisease phenotypingInformationPrecision medicine researchHealthcareIntegrationEHRIntriguing opportunity
2020
Bridging the Collaboration Gap: Real-time Identification of Clinical Specimens for Biomedical Research
Durant TJS, Gong G, Price N, Schulz WL. Bridging the Collaboration Gap: Real-time Identification of Clinical Specimens for Biomedical Research. Journal Of Pathology Informatics 2020, 11: 14. PMID: 32477620, PMCID: PMC7245342, DOI: 10.4103/jpi.jpi_15_20.Peer-Reviewed Original ResearchOpen source applicationsReal timeReal-time environmentDifferent use casesE-mail notificationData architectureUnstructured dataCommodity hardwareUse casesMinimal overheadReal-time identificationAdditional data typesData typesReal-world clinical dataCollaboration gapsClinical workflowSpecimen metadataTypical approachShort stability timeHealth platformNovel approachSpecimen retentionFuture workElasticsearchNotification
2016
Use of application containers and workflows for genomic data analysis
Schulz WL, Durant TJ, Siddon AJ, Torres R. Use of application containers and workflows for genomic data analysis. Journal Of Pathology Informatics 2016, 7: 53. PMID: 28163975, PMCID: PMC5248400, DOI: 10.4103/2153-3539.197197.Peer-Reviewed Original ResearchBig data processingGenomic data analysisSoftware deploymentApplication virtualizationApplication containersCommon analytic toolSoftware applicationsScalable platformData processingNext-generation sequencing dataComputational experimentsAnalytic toolsRecent technologiesNovel approachBiological dataNGS dataIntensive analysisAmount of timeData analysisVirtualizationDockerSuccessful implementationDevelopersBioinformaticiansWorkflow