Song Pang
Director, FIB-SEM Collaboration CoreCards
Contact Info
FIB-SEM Collaboration Core (F-SCC)
350 George Street
New Haven, CT 06511
United States
FIB-SEM Collaboration Core
Publications Overview
- 43 Publications
- 1,989 Citations
- 5 Yale Co-Authors
Contact Info
FIB-SEM Collaboration Core (F-SCC)
350 George Street
New Haven, CT 06511
United States
FIB-SEM Collaboration Core
Publications Overview
- 43 Publications
- 1,989 Citations
- 5 Yale Co-Authors
Contact Info
FIB-SEM Collaboration Core (F-SCC)
350 George Street
New Haven, CT 06511
United States
FIB-SEM Collaboration Core
Publications Overview
- 43 Publications
- 1,989 Citations
- 5 Yale Co-Authors
About
At the forefront of volume Electron Microscopy (vEM), we welcome your collaboration to take discoveries in biology, physiology, and pathology to a whole new level.
Titles
Director, FIB-SEM Collaboration Core
Biography
Pang’s primary research focus is to nucleate transformative technology development and to foster discoveries in life science. At YSM, she aims to expand the application space of the proprietary enhanced Focused Ion Beam Scanning Electron Microscopy (eFIB-SEM) technology beyond experimental model systems to the realms of translational and clinical research.
Prior to joining YSM, Pang was the lead scientist in FIB-SEM Technologies group at the Janelia Research Campus of Howard Hughes Medical Institute. She proposed and developed the enhanced FIB-SEM pipeline beyond Drosophila connectome research. She together with colleagues, created the very first open-access 3D atlas at the finest isotropic resolution using the eFIB-SEM platform.
Inspired to probe brain functions using semiconductor technologies, Pang applied her semiconductor device integration expertise to brain research. She oversaw all facets of device fabrication for customized extracellular neuroprobes and facilitated a partnership between Janelia and IMEC, a leading semiconductor research institute. Her vision and initiative transformed the Neuroprobe project into a massive multi-institute collaboration.
During her tenure in the semiconductor industry, Pang contributed to several major technology breakthroughs, from concept initiation to global implementation. At Intel Research, she led process development for a silicon-based optical modulator, achieving a fiftyfold improvement over previous world records. She also spearheaded the integration of Alternate Phase Shift Mask technology into Intel's high-volume manufacturing. Additionally, at semiconductor equipment companies, Pang launched innovative inspection solutions that revolutionized defect inspection in the photomask industry and introduced the first computational lithography calibration product, capturing over 90% market share within two years.
Joining YSM, Pang sees the FIB-SEM Collaboration Core as a discovery powerhouse. She aims to cultivate a vibrant ecosystem that synergistically integrates advanced imaging technologies, diverse applications, and robust data pipelines. She eagerly welcomes collaborations and looks forward to propelling life science research to new heights with her team and collaborators.
Departments & Organizations
- FIB-SEM Collaboration Core (F-SCC)
- Shan Xu Lab
Research
Overview
Google Scholar: Profile
Enhanced FIB-SEM Pipeline and Discoveries
By coupling nanoscale isotropic resolution with meso- and macro-scale volumes, the enhanced FIB-SEM pipeline (Pang & Xu, 2023) represents the beginning of a new field of high-resolution large volume electron microscopy to reveal the structure-function relationships in biology. This is demonstrated by over 40 publications since the technology's debut ( Xu et al., 2017), including Nature (Xu et al., 2021; Heinrich et al., 2021; Parlakgül et al., 2022; Obara et al., 2024), Science (Nixon-Abell et al., 2016; Gao et al., 2019; Hoffman et al., 2020; Ritter et al., 2022), and Cell (Ioannou et al., 2019; Weigel et al., 2021; Sheu et al., 2022), and Neuron (Handler et al., 2023), etc., many of which are major landmarks in the field.
ORCID
0000-0002-7231-4151- View Lab Website
FIB-SEM Collaboration Core
Publications
Featured Publications
Methods of enhanced FIB-SEM sample preparation and image acquisition
Pang S, Xu C. Methods of enhanced FIB-SEM sample preparation and image acquisition. Methods In Cell Biology 2023, 177: 269-300. PMID: 37451770, DOI: 10.1016/bs.mcb.2023.01.019.ChaptersCitationsTransforming FIB-SEMFocused Ion Beam Scanning Electron Microscopy (FIB-SEM) Systems for Large-Volume ConnectomicsConnectomics and Cell BiologyCell biology
Xu C, Pang S, Hayworth K, Hess H. Transforming FIB-SEMFocused Ion Beam Scanning Electron Microscopy (FIB-SEM) Systems for Large-Volume ConnectomicsConnectomics and Cell BiologyCell biology. Neuromethods 2020, 155: 221-243. DOI: 10.1007/978-1-0716-0691-9_12.Peer-Reviewed Original ResearchCitationsConceptsScanning electron microscopy systemIon beam scanning electron microscopyBeam scanning electron microscopyElectron microscopy systemScanning electron microscopyElectron microscopyLong-term reliabilityScanning electron microscopy technologyRobust imaging platformElectron microscopy technologyConventional FIBMicroscopy systemHigh resolutionFIB-SEMResolution requirementsCell biology researchBoundary conditionsFinal image stackFIBMicroscopy technologyHigh-resolution imagingOrders of magnitudeImaging platformLarge sample volumesImage volumesAn open-access volume electron microscopy atlas of whole cells and tissues
Xu CS, Pang S, Shtengel G, Müller A, Ritter AT, Hoffman HK, Takemura SY, Lu Z, Pasolli HA, Iyer N, Chung J, Bennett D, Weigel AV, Freeman M, van Engelenburg SB, Walther TC, Farese RV, Lippincott-Schwartz J, Mellman I, Solimena M, Hess HF. An open-access volume electron microscopy atlas of whole cells and tissues. Nature 2021, 599: 147-151. PMID: 34616045, PMCID: PMC9004664, DOI: 10.1038/s41586-021-03992-4.Peer-Reviewed Original ResearchCitationsAltmetricMeSH Keywords and ConceptsMeSH KeywordsAnimalsCell LineCells, CulturedDatasets as TopicDrosophila melanogasterFemaleGolgi ApparatusHumansInformation DisseminationInterphaseIslets of LangerhansMaleMiceMicroscopy, Electron, ScanningMicrotubulesNeurogliaNeuronsOpen Access PublishingOrganellesOvarian NeoplasmsRibosomesSynaptic VesiclesT-Lymphocytes, CytotoxicConceptsDrosophila neural tissueWhole cellsThin-section electron microscopyVolume electron microscopyCellular architectureMouse pancreatic isletsCancer cellsEM tomographyCellular structureCellsCellular samplesNeural tissuePancreatic isletsEnhanced signal detectionAtlasBeam-scanning electron microscopyTissueElectron microscopyOpen access dataBiologyImmune cellsSubsequent analysisSEM scanningMicroscopyWhole-cell organelle segmentation in volume electron microscopy
Heinrich L, Bennett D, Ackerman D, Park W, Bogovic J, Eckstein N, Petruncio A, Clements J, Pang S, Xu CS, Funke J, Korff W, Hess HF, Lippincott-Schwartz J, Saalfeld S, Weigel AV. Whole-cell organelle segmentation in volume electron microscopy. Nature 2021, 599: 141-146. PMID: 34616042, DOI: 10.1038/s41586-021-03977-3.Peer-Reviewed Original ResearchCitationsAltmetricMeSH Keywords and ConceptsConceptsAutomatic reconstructionDeep learning architectureLearning architectureWeb repositoriesOpen dataAutomatic methodThree-dimensional reconstructionSuch methodsVolume electron microscopyQueriesSegmentationRepositoryArchitectureComputer codeSpatial interactionsDatasetReconstructionImagesMetricsCodeSuch reconstructionsRegulation of liver subcellular architecture controls metabolic homeostasis
Parlakgül G, Arruda AP, Pang S, Cagampan E, Min N, Güney E, Lee GY, Inouye K, Hess HF, Xu CS, Hotamışlıgil GS. Regulation of liver subcellular architecture controls metabolic homeostasis. Nature 2022, 603: 736-742. PMID: 35264794, PMCID: PMC9014868, DOI: 10.1038/s41586-022-04488-5.Peer-Reviewed Original ResearchCitationsAltmetricMeSH Keywords and ConceptsA serotonergic axon-cilium synapse drives nuclear signaling to alter chromatin accessibility
Sheu SH, Upadhyayula S, Dupuy V, Pang S, Deng F, Wan J, Walpita D, Pasolli HA, Houser J, Sanchez-Martinez S, Brauchi SE, Banala S, Freeman M, Xu CS, Kirchhausen T, Hess HF, Lavis L, Li Y, Chaumont-Dubel S, Clapham DE. A serotonergic axon-cilium synapse drives nuclear signaling to alter chromatin accessibility. Cell 2022, 185: 3390-3407.e18. PMID: 36055200, PMCID: PMC9789380, DOI: 10.1016/j.cell.2022.07.026.Peer-Reviewed Original ResearchCitationsAltmetricMeSH Keywords and ConceptsConceptsCA1 pyramidal neuronsChromatin accessibilityPyramidal neuronsSerotonergic axonsEpigenetic statePrimary ciliaHippocampal CA1 pyramidal neuronsChemogenetic stimulationSerotonin receptorsNuclear actinReceptor 6Histone acetylationAxonsChemical synapsesIntercellular communicationRhoA pathwaySynapseNeuronsCiliaSynapsesStimulationPathwayNeurotransmissionReceptorsThree-dimensional reconstructions of mechanosensory end organs suggest a unifying mechanism underlying dynamic, light touch
Handler A, Zhang Q, Pang S, Nguyen T, Iskols M, Nolan-Tamariz M, Cattel S, Plumb R, Sanchez B, Ashjian K, Shotland A, Brown B, Kabeer M, Turecek J, DeLisle M, Rankin G, Xiang W, Pavarino E, Africawala N, Santiago C, Lee W, Xu C, Ginty D. Three-dimensional reconstructions of mechanosensory end organs suggest a unifying mechanism underlying dynamic, light touch. Neuron 2023, 111: 3211-3229.e9. PMID: 37725982, PMCID: PMC10773061, DOI: 10.1016/j.neuron.2023.08.023.Peer-Reviewed Original ResearchCitationsAltmetricMeSH Keywords and ConceptsSpatial mapping of hepatic ER and mitochondria architecture reveals zonated remodeling in fasting and obesity
Parlakgül G, Pang S, Artico L, Min N, Cagampan E, Villa R, Goncalves R, Lee G, Xu C, Hotamışlıgil G, Arruda A. Spatial mapping of hepatic ER and mitochondria architecture reveals zonated remodeling in fasting and obesity. Nature Communications 2024, 15: 3982. PMID: 38729945, PMCID: PMC11087507, DOI: 10.1038/s41467-024-48272-7.Peer-Reviewed Original ResearchCitationsAltmetricMeSH Keywords and ConceptsConceptsEndoplasmic reticulumER-mitochondria interactionsSubcellular spatial organizationER-mitochondriaER sheetsNutritional fluctuationsFatty acid oxidationNutrient availabilityHepatic fatty acid oxidationMetabolic flexibilityVolume electron microscopyHepatic ERMitochondriaLiver zonationSpatial organizationAcid oxidationPericentral hepatocytesHepatocytesMolecular architectureRibosomeProtein1ReticulumRemodelingZonationInteractionCOPII with ALG2 and ESCRTs control lysosome-dependent microautophagy of ER exit sites
Liao Y, Pang S, Li W, Shtengel G, Choi H, Schaefer K, Xu C, Lippincott-Schwartz J. COPII with ALG2 and ESCRTs control lysosome-dependent microautophagy of ER exit sites. Developmental Cell 2024, 59: 1410-1424.e4. PMID: 38593803, DOI: 10.1016/j.devcel.2024.03.027.Peer-Reviewed Original ResearchCitationsAltmetricConceptsEndoplasmic reticulum exit sitesER exit sitesAmino acid starvationPurified recombinant componentsExit siteProtein sortingSecretory pathwayMammalian cellsNutrient stressCellular conditionsEndoplasmic reticulumGiant unilamellar vesiclesTubular outgrowthsESCRTMicroautophagyNutrient stressorsALG2COPIILysosomesPathwayMTOR inhibitionUnilamellar vesiclesRecombinant componentsFocused ion beam scanning electron microscopyIon beam scanning electron microscopy3D architecture and a bicellular mechanism of touch detection in mechanosensory corpuscle
Nikolaev Y, Ziolkowski L, Pang S, Li W, Feketa V, Xu C, Gracheva E, Bagriantsev S. 3D architecture and a bicellular mechanism of touch detection in mechanosensory corpuscle. Science Advances 2023, 9: eadi4147. PMID: 37703368, PMCID: PMC10499330, DOI: 10.1126/sciadv.adi4147.Peer-Reviewed Original ResearchCitationsAltmetricMeSH Keywords and Concepts
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FIB-SEM Collaboration Core (F-SCC)
350 George Street
New Haven, CT 06511
United States
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300 George Street
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Fl 9th, Ste 900, Rm 106
New Haven, CT 06511