2014
MAGI: a Node.js web service for fast microRNA-Seq analysis in a GPU infrastructure
Kim J, Levy E, Ferbrache A, Stepanowsky P, Farcas C, Wang S, Brunner S, Bath T, Wu Y, Ohno-Machado L. MAGI: a Node.js web service for fast microRNA-Seq analysis in a GPU infrastructure. Bioinformatics 2014, 30: 2826-2827. PMID: 24907367, PMCID: PMC4173015, DOI: 10.1093/bioinformatics/btu377.Peer-Reviewed Original ResearchMeSH KeywordsComputational BiologyComputer GraphicsInternetMicroRNAsProgramming LanguagesSequence Analysis, RNASoftwareConceptsWeb servicesWeb reportsLarge input filesNovel feature extractionEnd performance improvementsExploration of resultsGPU infrastructureInteractive visualizationJavaScript frameworkParallel computingGPU devicesHypertext PreprocessorCUDA CFeature extractionDrop operationInput filesPlot generationSalient featuresPerformance improvementInfrastructureNodesServicesData analysisComputingBrowser
2012
A collaborative framework for Distributed Privacy-Preserving Support Vector Machine learning.
Que J, Jiang X, Ohno-Machado L. A collaborative framework for Distributed Privacy-Preserving Support Vector Machine learning. AMIA Annual Symposium Proceedings 2012, 2012: 1350-9. PMID: 23304414, PMCID: PMC3540462.Peer-Reviewed Original ResearchConceptsSupport vector machineVector machinePrivacy-preserving collaborative learningSensitive raw dataPrivacy-preserving mannerEfficient information exchangeDistributed PrivacyLocal repositoryPrivacy concernsCentralized repositoryCollaborative frameworkDecision supportMultiple participantsInformation exchangeRaw dataSVM modelIntermediary resultsMachineCollaborative learningPrivacyPopular toolRepositoryTraditional wayPatient dataServer
2005
Real-time ECG algorithms for ambulatory patient monitoring.
Pino E, Ohno-Machado L, Wiechmann E, Curtis D. Real-time ECG algorithms for ambulatory patient monitoring. AMIA Annual Symposium Proceedings 2005, 2005: 604-8. PMID: 16779111, PMCID: PMC1560458.Peer-Reviewed Original Research
2000
GLIF3: the evolution of a guideline representation format.
Peleg M, Boxwala A, Ogunyemi O, Zeng Q, Tu S, Lacson R, Bernstam E, Ash N, Mork P, Ohno-Machado L, Shortliffe E, Greenes R. GLIF3: the evolution of a guideline representation format. AMIA Annual Symposium Proceedings 2000, 645-9. PMID: 11079963, PMCID: PMC2243832.Peer-Reviewed Original ResearchMeSH KeywordsDecision Support TechniquesPractice Guidelines as TopicProgramming LanguagesSoftware DesignConceptsGuideline Interchange FormatInstitutional information systemsComputable specificationImplementable specificationInterchange formatAutomatic inferenceRepresentation formatStructured representationText stringsInformation systemsStructured constructsGLIF3Action specificationFormal definitionConceptual flowchartExecutionSpecificationPatient dataStructured stepsLogical consistencyNew versionFormatNew constructDecision criteriaFlowchart
1999
A framework and tools for authoring, editing, documenting, sharing, searching, navigating, and executing computer-based clinical guidelines.
Greenes R, Boxwala A, Sloan W, Ohno-Machado L, Deibel S. A framework and tools for authoring, editing, documenting, sharing, searching, navigating, and executing computer-based clinical guidelines. AMIA Annual Symposium Proceedings 1999, 261-5. PMID: 10566361, PMCID: PMC2232593.Peer-Reviewed Original ResearchMeSH KeywordsEligibility DeterminationHumansPractice Guidelines as TopicProgramming LanguagesSoftwareSoftware DesignConceptsComputer-based clinical guidelineInterMed CollaboratoryAutomatic executionSoftware toolsGuideline representationDelivery networkInternet distributionSharingSpecificationXMLFrameworkGLIFNavigationExecutionCollaboratoryToolNetworkImplementationRepresentationSuiteEditingEligibility determinationDocumentingDecision support for clinical trial eligibility determination in breast cancer.
Ohno-Machado L, Wang S, Mar P, Boxwala A. Decision support for clinical trial eligibility determination in breast cancer. AMIA Annual Symposium Proceedings 1999, 340-4. PMID: 10566377, PMCID: PMC2232554.Peer-Reviewed Original ResearchMeSH KeywordsAlgorithmsBreast NeoplasmsClinical Trials as TopicDatabases as TopicDecision Making, Computer-AssistedHumansPatient SelectionProgramming LanguagesConceptsClinical trial eligibility determinationPhysician Data Query databaseEligibility criteriaClinical trialsBreast cancerMetastatic breast cancerPrimary care providersClinical trial protocolTrial protocolFree-text eligibility criteriaCare providersClinical informationEligibility informationPatientsEligibility determinationPatient informationPhase IICancerTrialsOrder of likelihoodNumerical scoreCriteria