2017
Ensembles of NLP Tools for Data Element Extraction from Clinical Notes.
Kuo T, Rao P, Maehara C, Doan S, Chaparro J, Day M, Farcas C, Ohno-Machado L, Hsu C. Ensembles of NLP Tools for Data Element Extraction from Clinical Notes. AMIA Annual Symposium Proceedings 2017, 2016: 1880-1889. PMID: 28269947, PMCID: PMC5333200.Peer-Reviewed Original ResearchConceptsNatural language processingNLP toolsElectronic health recordsData elementsConcept extractionLanguage processingEnsemble methodDiverse conceptsEvaluation resultsHealth recordsElement extractionClinical notesPlausible solutionToolPipelineExtractionPerformanceEnsembleExtraction performanceConceptNarrative textProcessingText
2014
Natural Language Processing in Biomedicine: A Unified System Architecture Overview
Doan S, Conway M, Phuong T, Ohno-Machado L. Natural Language Processing in Biomedicine: A Unified System Architecture Overview. Methods In Molecular Biology 2014, 1168: 275-294. PMID: 24870142, DOI: 10.1007/978-1-4939-0847-9_16.Peer-Reviewed Reviews, Practice Guidelines, Standards, and Consensus StatementsConceptsNatural language processingNLP systemsLanguage processingClinical natural language processingBiomedical natural language processingClinical decision supportImportant data sourceArchitectural viewsStructured data fieldsArchitecture overviewData sharingNLP toolsGeneral architectureDecision supportKnowledge resourcesBackground knowledgeData fieldsCollaborative workSystem evaluationData sourcesCurrent research effortsElectronic medical recordsResearch effortsProcessingQuality assurance