2014
HUGO: Hierarchical mUlti-reference Genome cOmpression for aligned reads
Li P, Jiang X, Wang S, Kim J, Xiong H, Ohno-Machado L. HUGO: Hierarchical mUlti-reference Genome cOmpression for aligned reads. Journal Of The American Medical Informatics Association 2014, 21: 363-373. PMID: 24368726, PMCID: PMC3932469, DOI: 10.1136/amiajnl-2013-002147.Peer-Reviewed Original ResearchConceptsBase quality valuesCompression algorithmStorage savingsGenome compressionSequence Alignment/Map (SAM) formatCompression ratioNovel compression algorithmComparable compression ratioCompression mechanismK-means clusteringDifferent reference genomesQuality valuesDecompression qualityLossless compressionExecution timeCompression rateAligned readsMap formatAlgorithmBiomedical communityDifferent quality valuesExperimental datasetsAdaptive schemeStorage capabilityArchiving
2012
SecUre Privacy-presERving Medical Image CompRessiOn (SUPERMICRO)
Wang S, Jiang X, Ohno-Machado L, Cui L, Cheng S. SecUre Privacy-presERving Medical Image CompRessiOn (SUPERMICRO). 2012, 1: 130-130. DOI: 10.1109/hisb.2012.55.Peer-Reviewed Original ResearchNational Health Information NetworkBiomedical dataPrivacy-preserving mannerImage compression frameworkMedical image compressionTraditional compression algorithmsHigh compression performanceCT image sequencesHealth Information NetworkSecure privacyCompression frameworkImage compressionPrivacy protectionSecure mannerCompression algorithmCompression efficiencyLossless compressionElectronic health recordsSource codingCompression performanceImage sequencesData transmissionIntuitive wayInformation networksPrivacy