2024
Implications of mappings between International Classification of Diseases clinical diagnosis codes and Human Phenotype Ontology terms
Tan A, Gonçalves R, Yuan W, Brat G, Gentleman R, Kohane I, Masino A, Makoudjou A, Albayrak A, Gutiérrez-Sacristán A, Zambelli A, Malovini A, Carmona A, Hoffmann A, Gramfort A, Geva A, Blanco-Martínez A, Tan A, Terriza-Torres A, Spiridou A, Prunotto A, South A, Vallejos A, Atz A, Burgun A, Alloni A, Cattelan A, Jannot A, Neuraz A, Bellasi A, Maram A, Dagliati A, Sandrin A, Serret-Larmande A, Mensch A, Pfaff A, Batugo A, Krishnamurthy A, Adam A, Dionne A, Devkota B, Moal B, He B, Beaulieu-Jones B, Beaulieu-Jones B, Ostasiewski B, Aronow B, Tan B, Tan B, Torti C, Sáez C, Neto C, Sonday C, Caucheteux C, Mao C, Zucco C, Daniel C, Haverkamp C, Hong C, Bonzel C, Moraleda C, Leprovost D, Key D, Zöller D, Pillion D, Mowery D, Amendola D, Henderson D, Hanauer D, Taylor D, Wassermann D, Hazard D, Kraska D, Mazzotti D, Silvio D, Bell D, Murad D, Salamanca E, Bucholz E, Getzen E, Pfaff E, Schriver E, Toh E, Parimbelli E, Trecarichi E, Ashraf F, Vidorreta F, Bourgeois F, Sperotto F, Angoulvant F, Brat G, Varoquaux G, Omenn G, Agapito G, Albi G, Weber G, Verdy G, Lemaitre G, Roig-Domínguez G, Prokosch H, Zhang H, Estiri H, Krantz I, Kohane I, Honerlaw J, Cruz-Rojo J, Norman J, Balshi J, Cimino J, Aaron J, Santos J, Newburger J, Zahner J, Moore J, Marwaha J, Craig J, Klann J, Morris J, Obeid J, Vie J, Chen J, Son J, Zachariasse J, Booth J, Holmes J, Bernal-Sobrino J, Cruz-Bermúdez J, Leblanc J, Schuettler J, Dubiel J, Champ J, Olson K, Moshal K, Kernan K, Kirchoff K, Wagholikar K, Ngiam K, Cho K, Mandl K, Huling K, Chen K, Lynch K, Sanchez-Pinto L, Garmire L, Han L, Patel L, Waitman L, Lenert L, Anthony L, Esteve L, Chiudinelli L, Chiovato L, Scudeller L, Samayamuthu M, Martins M, Minicucci M, Menezes M, Vella M, Mazzitelli M, Savino M, Milano M, Okoshi M, Cannataro M, Alessiani M, Keller M, Hilka M, Wolkewitz M, Boeker M, Raskin M, Bucalo M, Hutch M, Bernaux M, Beraghi M, Morris M, Vitacca M, Pedrera-Jiménez M, Daniar M, Shah M, Liu M, Maripuri M, Kainth M, Yehya N, Santhanam N, Palmer N, Loh N, Sebire N, Romero-Garcia N, Brown N, Paris N, Griffon N, Gehlenborg N, Orlova N, García-Barrio N, Grisel O, Rojo P, Serrano-Balazote P, Sacchi P, Tippmann P, Martel P, Serre P, Avillach P, Azevedo P, Rubio-Mayo P, Schubert P, Guzzi P, Sliz P, Das P, Long Q, Ramoni R, Goh R, Badenes R, Bruno R, Kavuluru R, Bellazzi R, Issitt R, Follett R, Bradford R, Prudente R, Bey R, Griffier R, Duan R, Mahmood S, Mousavi S, Lozano-Zahonero S, Pizzimenti S, Maidlow S, Wong S, DuVall S, Cossin S, L'Yi S, Murphy S, Fan S, Visweswaran S, Rieg S, Bosari S, Makwana S, Bréant S, Bhatnagar S, Tanni S, Cormont S, Ahooyi T, Priya T, Naughton T, Ganslandt T, Colicchio T, Cai T, Gradinger T, González T, Zuccaro V, Tibollo V, Jouhet V, Quirós-González V, Panickan V, Benoit V, Njoroge W, Bryant W, Yuan W, Xiong X, Wang X, Ye Y, Luo Y, Ho Y, Strasser Z, Abad Z, Xia Z, Kate K, Hernández-Arango A, Schwamm E. Implications of mappings between International Classification of Diseases clinical diagnosis codes and Human Phenotype Ontology terms. JAMIA Open 2024, 7: ooae118. PMID: 39559493, PMCID: PMC11570992, DOI: 10.1093/jamiaopen/ooae118.Peer-Reviewed Original ResearchElectronic health recordsElectronic health record datasetInternational Classification of Diseases codesInternational Classification of DiseasesAlignment of ontologiesMedical Language SystemHuman Phenotype OntologyData annotationBiomedical entitiesUMLData integrationElectronic health record dataInternational ClassificationHuman Phenotype Ontology termsHealth recordsOntologyCodeAnnotated phenotypesClinical diagnosis codesClassification of DiseasesLanguage systemDatasetResearch ontologyMap coverageDiagnosis codes
2022
Hospitalizations Associated With Mental Health Conditions Among Adolescents in the US and France During the COVID-19 Pandemic
Gutiérrez-Sacristán A, Serret-Larmande A, Hutch M, Sáez C, Aronow B, Bhatnagar S, Bonzel C, Cai T, Devkota B, Hanauer D, Loh N, Luo Y, Moal B, Ahooyi T, Njoroge W, Omenn G, Sanchez-Pinto L, South A, Sperotto F, Tan A, Taylor D, Verdy G, Visweswaran S, Xia Z, Zahner J, Avillach P, Bourgeois F, Aaron J, Agapito G, Albayrak A, Albi G, Alessiani M, Alloni A, Amendola D, Angoulvant F, Anthony L, Ashraf F, Atz A, Azevedo P, Balshi J, Beaulieu-Jones B, Bell D, Bellasi A, Bellazzi R, Benoit V, Beraghi M, Bernal-Sobrino J, Bernaux M, Bey R, Blanco-Martínez A, Boeker M, Booth J, Bosari S, Bradford R, Brat G, Bréant S, Brown N, Bruno R, Bryant W, Bucalo M, Bucholz E, Burgun A, Cannataro M, Carmona A, Caucheteux C, Champ J, Chen J, Chen K, Chiovato L, Chiudinelli L, Cho K, Cimino J, Colicchio T, Cormont S, Cossin S, Craig J, Cruz-Bermúdez J, Cruz-Rojo J, Dagliati A, Daniar M, Daniel C, Das P, Dionne A, Duan R, Dubiel J, DuVall S, Esteve L, Estiri H, Fan S, Follett R, Ganslandt T, García-Barrio N, Garmire L, Gehlenborg N, Getzen E, Geva A, González González T, Gradinger T, Gramfort A, Griffier R, Griffon N, Grisel O, Guzzi P, Han L, Haverkamp C, Hazard D, He B, Henderson D, Hilka M, Ho Y, Holmes J, Hong C, Huling K, Issitt R, Jannot A, Jouhet V, Kavuluru R, Keller M, Kennedy C, Kernan K, Key D, Kirchoff K, Klann J, Kohane I, Krantz I, Kraska D, Krishnamurthy A, L'Yi S, Le T, Leblanc J, Lemaitre G, Lenert L, Leprovost D, Liu M, Long Q, Lozano-Zahonero S, Lynch K, Mahmood S, Maidlow S, Makoudjou A, Malovini A, Mandl K, Mao C, Maram A, Martel P, Martins M, Marwaha J, Masino A, Mazzitelli M, Mensch A, Milano M, Minicucci M, Moore J, Moraleda C, Morris J, Morris M, Moshal K, Mousavi S, Mowery D, Murad D, Murphy S, Naughton T, Neto C, Neuraz A, Newburger J, Ngiam K, Norman J, Obeid J, Okoshi M, Olson K, Orlova N, Ostasiewski B, Palmer N, Paris N, Patel L, Pedrera-Jiménez M, Pfaff A, Pfaff E, Pillion D, Pizzimenti S, Priya T, Prokosch H, Prudente R, Prunotto A, Quirós-González V, Ramoni R, Raskin M, Rieg S, Roig-Domínguez G, Rojo P, Rubio-Mayo P, Sacchi P, Salamanca E, Samayamuthu M, Sandrin A, Santhanam N, Santos J, Sanz Vidorreta F, Savino M, Schriver E, Schubert P, Schuettler J, Scudeller L, Sebire N, Serrano-Balazote P, Serre P, Shah M, Shakeri Hossein Abad Z, Silvio D, Sliz P, Son J, Sonday C, Spiridou A, Strasser Z, Tan B, Tan B, Tanni S, Terriza-Torres A, Tibollo V, Tippmann P, Toh E, Torti C, Trecarichi E, Vallejos A, Varoquaux G, Vella M, Vie J, Vitacca M, Wagholikar K, Waitman L, Wang X, Wassermann D, Weber G, Wolkewitz M, Wong S, Xiong X, Ye Y, Yehya N, Yuan W, Zambelli A, Zhang H, Zöller D, Zuccaro V, Zucco C. Hospitalizations Associated With Mental Health Conditions Among Adolescents in the US and France During the COVID-19 Pandemic. JAMA Network Open 2022, 5: e2246548. PMID: 36512353, PMCID: PMC9856226, DOI: 10.1001/jamanetworkopen.2022.46548.Peer-Reviewed Original ResearchConceptsMental health conditionsMental health diagnosesHealth conditionsCohort studyChildren's HospitalPrepandemic periodCOVID-19 pandemicMental health condition diagnosisHealth diagnosisProportion of hospitalizationsMultisite cohort studyMonthly proportionPatient-level dataYears of ageElectronic health recordsHealth care data setsPrepandemic cohortPrevalent diagnosisMean agePandemic cohortHealth condition diagnosisHospitalization patternsHospitalizationMAIN OUTCOMEAdolescents 11