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Showing 3 of 3 Publications

2024

  • Implications of mappings between International Classification of Diseases clinical diagnosis codes and Human Phenotype Ontology terms

    Tan A, Gonçalves R, Yuan W, Brat G, Gentleman R, Kohane I, Masino A, Makoudjou A, Albayrak A, Gutiérrez-Sacristán A, Zambelli A, Malovini A, Carmona A, Hoffmann A, Gramfort A, Geva A, Blanco-Martínez A, Tan A, Terriza-Torres A, Spiridou A, Prunotto A, South A, Vallejos A, Atz A, Burgun A, Alloni A, Cattelan A, Jannot A, Neuraz A, Bellasi A, Maram A, Dagliati A, Sandrin A, Serret-Larmande A, Mensch A, Pfaff A, Batugo A, Krishnamurthy A, Adam A, Dionne A, Devkota B, Moal B, He B, Beaulieu-Jones B, Beaulieu-Jones B, Ostasiewski B, Aronow B, Tan B, Tan B, Torti C, Sáez C, Neto C, Sonday C, Caucheteux C, Mao C, Zucco C, Daniel C, Haverkamp C, Hong C, Bonzel C, Moraleda C, Leprovost D, Key D, Zöller D, Pillion D, Mowery D, Amendola D, Henderson D, Hanauer D, Taylor D, Wassermann D, Hazard D, Kraska D, Mazzotti D, Silvio D, Bell D, Murad D, Salamanca E, Bucholz E, Getzen E, Pfaff E, Schriver E, Toh E, Parimbelli E, Trecarichi E, Ashraf F, Vidorreta F, Bourgeois F, Sperotto F, Angoulvant F, Brat G, Varoquaux G, Omenn G, Agapito G, Albi G, Weber G, Verdy G, Lemaitre G, Roig-Domínguez G, Prokosch H, Zhang H, Estiri H, Krantz I, Kohane I, Honerlaw J, Cruz-Rojo J, Norman J, Balshi J, Cimino J, Aaron J, Santos J, Newburger J, Zahner J, Moore J, Marwaha J, Craig J, Klann J, Morris J, Obeid J, Vie J, Chen J, Son J, Zachariasse J, Booth J, Holmes J, Bernal-Sobrino J, Cruz-Bermúdez J, Leblanc J, Schuettler J, Dubiel J, Champ J, Olson K, Moshal K, Kernan K, Kirchoff K, Wagholikar K, Ngiam K, Cho K, Mandl K, Huling K, Chen K, Lynch K, Sanchez-Pinto L, Garmire L, Han L, Patel L, Waitman L, Lenert L, Anthony L, Esteve L, Chiudinelli L, Chiovato L, Scudeller L, Samayamuthu M, Martins M, Minicucci M, Menezes M, Vella M, Mazzitelli M, Savino M, Milano M, Okoshi M, Cannataro M, Alessiani M, Keller M, Hilka M, Wolkewitz M, Boeker M, Raskin M, Bucalo M, Hutch M, Bernaux M, Beraghi M, Morris M, Vitacca M, Pedrera-Jiménez M, Daniar M, Shah M, Liu M, Maripuri M, Kainth M, Yehya N, Santhanam N, Palmer N, Loh N, Sebire N, Romero-Garcia N, Brown N, Paris N, Griffon N, Gehlenborg N, Orlova N, García-Barrio N, Grisel O, Rojo P, Serrano-Balazote P, Sacchi P, Tippmann P, Martel P, Serre P, Avillach P, Azevedo P, Rubio-Mayo P, Schubert P, Guzzi P, Sliz P, Das P, Long Q, Ramoni R, Goh R, Badenes R, Bruno R, Kavuluru R, Bellazzi R, Issitt R, Follett R, Bradford R, Prudente R, Bey R, Griffier R, Duan R, Mahmood S, Mousavi S, Lozano-Zahonero S, Pizzimenti S, Maidlow S, Wong S, DuVall S, Cossin S, L'Yi S, Murphy S, Fan S, Visweswaran S, Rieg S, Bosari S, Makwana S, Bréant S, Bhatnagar S, Tanni S, Cormont S, Ahooyi T, Priya T, Naughton T, Ganslandt T, Colicchio T, Cai T, Gradinger T, González T, Zuccaro V, Tibollo V, Jouhet V, Quirós-González V, Panickan V, Benoit V, Njoroge W, Bryant W, Yuan W, Xiong X, Wang X, Ye Y, Luo Y, Ho Y, Strasser Z, Abad Z, Xia Z, Kate K, Hernández-Arango A, Schwamm E. Implications of mappings between International Classification of Diseases clinical diagnosis codes and Human Phenotype Ontology terms. JAMIA Open 2024, 7: ooae118. PMID: 39559493, PMCID: PMC11570992, DOI: 10.1093/jamiaopen/ooae118.
    Peer-Reviewed Original Research

2023

  • Characterization of long COVID temporal sub-phenotypes by distributed representation learning from electronic health record data: a cohort study

    Dagliati A, Strasser Z, Abad Z, Klann J, Wagholikar K, Mesa R, Visweswaran S, Morris M, Luo Y, Henderson D, Samayamuthu M, Tan B, Verdy G, Omenn G, Xia Z, Bellazzi R, EHR T, Aaron J, Agapito G, Albayrak A, Albi G, Alessiani M, Alloni A, Amendola D, Angoulvant F, Anthony L, Aronow B, Ashraf F, Atz A, Avillach P, Azevedo P, Balshi J, Beaulieu-Jones B, Bell D, Bellasi A, Bellazzi R, Benoit V, Beraghi M, Bernal-Sobrino J, Bernaux M, Bey R, Bhatnagar S, Blanco-Martínez A, Bonzel C, Booth J, Bosari S, Bourgeois F, Bradford R, Brat G, Bréant S, Brown N, Bruno R, Bryant W, Bucalo M, Bucholz E, Burgun A, Cai T, Cannataro M, Carmona A, Caucheteux C, Champ J, Chen J, Chen K, Chiovato L, Chiudinelli L, Cho K, Cimino J, Colicchio T, Cormont S, Cossin S, Craig J, Cruz-Bermúdez J, Cruz-Rojo J, Dagliati A, Daniar M, Daniel C, Das P, Devkota B, Dionne A, Duan R, Dubiel J, DuVall S, Esteve L, Estiri H, Fan S, Follett R, Ganslandt T, Barrio N, Garmire L, Gehlenborg N, Getzen E, Geva A, Gradinger T, Gramfort A, Griffier R, Griffon N, Grisel O, Gutiérrez-Sacristán A, Han L, Hanauer D, Haverkamp C, Hazard D, He B, Henderson D, Hilka M, Ho Y, Holmes J, Hong C, Huling K, Hutch M, Issitt R, Jannot A, Jouhet V, Kavuluru R, Keller M, Kennedy C, Key D, Kirchoff K, Klann J, Kohane I, Krantz I, Kraska D, Krishnamurthy A, L'Yi S, Le T, Leblanc J, Lemaitre G, Lenert L, Leprovost D, Liu M, Loh N, Long Q, Lozano-Zahonero S, Luo Y, Lynch K, Mahmood S, Maidlow S, Makoudjou A, Malovini A, Mandl K, Mao C, Maram A, Martel P, Martins M, Marwaha J, Masino A, Mazzitelli M, Mensch A, Milano M, Minicucci M, Moal B, Ahooyi T, Moore J, Moraleda C, Morris J, Morris M, Moshal K, Mousavi S, Mowery D, Murad D, Murphy S, Naughton T, Neto C, Neuraz A, Newburger J, Ngiam K, Njoroge W, Norman J, Obeid J, Okoshi M, Olson K, Omenn G, Orlova N, Ostasiewski B, Palmer N, Paris N, Patel L, Pedrera-Jiménez M, Pfaff E, Pfaff A, Pillion D, Pizzimenti S, Prokosch H, Prudente R, Prunotto A, Quirós-González V, Ramoni R, Raskin M, Rieg S, Roig-Domínguez G, Rojo P, Rubio-Mayo P, Sacchi P, Sáez C, Salamanca E, Samayamuthu M, Sanchez-Pinto L, Sandrin A, Santhanam N, Santos J, Vidorreta F, Savino M, Schriver E, Schubert P, Schuettler J, Scudeller L, Sebire N, Serrano-Balazote P, Serre P, Serret-Larmande A, Shah M, Abad Z, Silvio D, Sliz P, Son J, Sonday C, South A, Spiridou A, Strasser Z, Tan A, Tan B, Tan B, Tanni S, Taylor D, Terriza-Torres A, Tibollo V, Tippmann P, Toh E, Torti C, Trecarichi E, Tseng Y, Vallejos A, Varoquaux G, Vella M, Verdy G, Vie J, Visweswaran S, Vitacca M, Wagholikar K, Waitman L, Wang X, Wassermann D, Weber G, Wolkewitz M, Wong S, Xia Z, Xiong X, Ye Y, Yehya N, Yuan W, Zambelli A, Zhang H, Zo¨ller D, Zuccaro V, Zucco C, Murphy S, Holmes J, Estiri H. Characterization of long COVID temporal sub-phenotypes by distributed representation learning from electronic health record data: a cohort study. EClinicalMedicine 2023, 64: 102210. PMID: 37745021, PMCID: PMC10511779, DOI: 10.1016/j.eclinm.2023.102210.
    Peer-Reviewed Original Research

  • Clinical phenotypes and outcomes in children with multisystem inflammatory syndrome across SARS-CoV-2 variant eras: a multinational study from the 4CE consortium

    Sperotto F, Gutiérrez-Sacristán A, Makwana S, Li X, Rofeberg V, Cai T, Bourgeois F, Omenn G, Hanauer D, Sáez C, Bonzel C, Bucholz E, Dionne A, Elias M, García-Barrio N, González T, Issitt R, Kernan K, Laird-Gion J, Maidlow S, Mandl K, Ahooyi T, Moraleda C, Morris M, Moshal K, Pedrera-Jiménez M, Shah M, South A, Spiridou A, Taylor D, Verdy G, Visweswaran S, Wang X, Xia Z, Zachariasse J, EHR T, Aaron J, Adam A, Agapito G, Albayrak A, Albi G, Alessiani M, Alloni A, Amendola D, Angoulvant F, Anthony L, Aronow B, Ashraf F, Atz A, Avillach P, Panickan V, Azevedo P, Badenes R, Balshi J, Batugo A, Beaulieu-Jones B, Beaulieu-Jones B, Bell D, Bellasi A, Bellazzi R, Benoit V, Beraghi M, Bernal-Sobrino J, Bernaux M, Bey R, Bhatnagar S, Blanco-Martínez A, Boeker M, Bonzel C, Booth J, Bosari S, Bourgeois F, Bradford R, Brat G, Bréant S, Brown N, Bruno R, Bryant W, Bucalo M, Bucholz E, Burgun A, Cai T, Cannataro M, Carmona A, Cattelan A, Caucheteux C, Champ J, Chen J, Chen K, Chiovato L, Chiudinelli L, Cho K, Cimino J, Colicchio T, Cormont S, Cossin S, Craig J, Cruz-Bermúdez J, Cruz-Rojo J, Dagliati A, Daniar M, Daniel C, Das P, Devkota B, Dionne A, Duan R, Dubiel J, DuVall S, Esteve L, Estiri H, Fan S, Follett R, Ganslandt T, García-Barrio N, Garmire L, Gehlenborg N, Getzen E, Geva A, Goh R, González T, Gradinger T, Gramfort A, Griffier R, Griffon N, Grisel O, Gutiérrez-Sacristán A, Guzzi P, Han L, Hanauer D, Haverkamp C, Hazard D, He B, Henderson D, Hilka M, Ho Y, Holmes J, Honerlaw J, Hong C, Huling K, Hutch M, Issitt R, Jannot A, Jouhet V, Kainth M, Kate K, Kavuluru R, Keller M, Kennedy C, Kernan K, Key D, Kirchoff K, Klann J, Kohane I, Krantz I, Kraska D, Krishnamurthy A, L'Yi S, Leblanc J, Lemaitre G, Lenert L, Leprovost D, Liu M, Loh N, Long Q, Lozano-Zahonero S, Luo Y, Lynch K, Mahmood S, Maidlow S, Makoudjou A, Makwana S, Malovini A, Mandl K, Mao C, Maram A, Maripuri M, Martel P, Martins M, Marwaha J, Masino A, Mazzitelli M, Mazzotti D, Mensch A, Milano M, Minicucci M, Moal B, Ahooyi T, Moore J, Moraleda C, Morris J, Morris M, Moshal K, Mousavi S, Mowery D, Murad D, Murphy S, Naughton T, Neto C, Neuraz A, Newburger J, Ngiam K, Njoroge W, Norman J, Obeid J, Okoshi M, Olson K, Omenn G, Orlova N, Ostasiewski B, Palmer N, Paris N, Patel L, Pedrera-Jiménez M, Pfaff A, Pfaff E, Pillion D, Pizzimenti S, Priya T, Prokosch H, Prudente R, Prunotto A, Quirós-González V, Ramoni R, Raskin M, Rieg S, Roig-Domínguez G, Rojo P, Romero-Garcia N, Rubio-Mayo P, Sacchi P, Sáez C, Salamanca E, Samayamuthu M, Sanchez-Pinto L, Sandrin A, Santhanam N, Santos J, Vidorreta F, Savino M, Schriver E, Schubert P, Schuettler J, Scudeller L, Sebire N, Serrano-Balazote P, Serre P, Serret-Larmande A, Shah M, Abad Z, Silvio D, Sliz P, Son J, Sonday C, South A, Sperotto F, Spiridou A, Strasser Z, Tan A, Tan B, Tan B, Tanni S, Taylor D, Terriza-Torres A, Tibollo V, Tippmann P, Toh E, Torti C, Trecarichi E, Vallejos A, Varoquaux G, Vella M, Verdy G, Vie J, Visweswaran S, Vitacca M, Wagholikar K, Waitman L, Wang X, Wassermann D, Weber G, Wolkewitz M, Wong S, Xia Z, Xiong X, Ye Y, Yehya N, Yuan W, Zachariasse J, Zahner J, Zambelli A, Zhang H, Zöller D, Zuccaro V, Zucco C, Newburger J, Avillach P. Clinical phenotypes and outcomes in children with multisystem inflammatory syndrome across SARS-CoV-2 variant eras: a multinational study from the 4CE consortium. EClinicalMedicine 2023, 64: 102212. PMID: 37745025, PMCID: PMC10511777, DOI: 10.1016/j.eclinm.2023.102212.
    Peer-Reviewed Original Research
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