Kallol Gupta, PhD
Assistant Professor of Cell BiologyCards
Appointments
Additional Titles
Co-Directors of Graduate Admission- BBS MCGD Track , Department of Cell Biology
Cell Biology DEI Committee member, Department of Cell Biology
Yale West Campus DEI Committee member, Yale West Campus
Contact Info
Appointments
Additional Titles
Co-Directors of Graduate Admission- BBS MCGD Track , Department of Cell Biology
Cell Biology DEI Committee member, Department of Cell Biology
Yale West Campus DEI Committee member, Yale West Campus
Contact Info
Appointments
Additional Titles
Co-Directors of Graduate Admission- BBS MCGD Track , Department of Cell Biology
Cell Biology DEI Committee member, Department of Cell Biology
Yale West Campus DEI Committee member, Yale West Campus
Contact Info
About
Titles
Assistant Professor of Cell Biology
Co-Directors of Graduate Admission- BBS MCGD Track , Department of Cell Biology; Cell Biology DEI Committee member, Department of Cell Biology; Yale West Campus DEI Committee member, Yale West Campus
Biography
Trained as a chemist, I was introduced to the world of biology through the aquatic route, where my goal was to uncover the molecular diversity present in the venoms of marine cone snails and understand how it impairs the functions of key ion channels and transporters. This introduced me to the world of membrane proteins and fascinated me.
I subsequently moved to the University of Oxford as a Fellow of the 1851 Royal Commission. My research led to a transformative advancement that enabled top-down mass spectrometric (MS) analysis of membrane protein-lipid complexes. The application of this approach yielded an atomistic understanding of how lipids act as key signaling molecules that regulate the structural and functional organization of membrane proteins.
In the Fall of 2018, I crossed the pond to start my own lab at Yale. Combining native mass spectrometry with an array of orthogonal chemical biology and experimental and computational approaches, our lab is focused on developing platforms that enable quantitative analysis of macromolecular protein complexes directly from the cellular environment. Applying this, the lab aims to understand how the spatiotemporal organization of membrane proteins and lipids regulates cellular physiology. For more, check out https://www.theguptalab.com/
Appointments
Cell Biology
Assistant ProfessorPrimary
Other Departments & Organizations
- Biochemistry, Quantitative Biology, Biophysics and Structural Biology (BQBS)
- Cell Biology
- Cell Biology Research
- Membrane Traffic
- Molecular Cell Biology, Genetics and Development
- Yale Combined Program in the Biological and Biomedical Sciences (BBS)
Education & Training
- Non Degree Program
- University of Oxford, Department of Chemistry (2018)
- Fellow of the 1851 Royal Commission
- Oxford University (2018)
- PhD
- Indian Institute of Science, Molecular Biophysics Unit (2013)
- BSc
- Presidency College, Chemistry (2005)
Research
Overview
Medical Research Interests
ORCID
0000-0002-3557-3242- View Lab Website
Gupta Lab
Research at a Glance
Yale Co-Authors
Publications Timeline
Research Interests
Moitrayee Bhattacharyya, PhD
Aniruddha Panda
Jeff Coleman, PhD
Mandar Deepak Muzumdar, MD
Nikhil S. Malvankar
Sathish Ramakrishnan, PhD
Mass Spectrometry
Cell Membrane Permeability
Publications
2024
A proteome-wide quantitative platform for nanoscale spatially resolved extraction of membrane proteins into native nanodiscs
Brown C, Ghosh S, McAllister R, Kumar M, Walker G, Sun E, Aman T, Panda A, Kumar S, Li W, Coleman J, Liu Y, Rothman J, Bhattacharyya M, Gupta K. A proteome-wide quantitative platform for nanoscale spatially resolved extraction of membrane proteins into native nanodiscs. Nature Methods 2024, 1-10. PMID: 39609567, DOI: 10.1038/s41592-024-02517-x.Peer-Reviewed Original ResearchAltmetricConceptsTarget membrane proteinsMembrane proteinsMembrane contextSynaptic vesicle membrane proteinVesicle membrane proteinsMammalian membrane proteinsMembrane-active polymersExtraction of membrane proteinsNative nanodiscsOrganellar membranesNative membrane environmentMultiprotein complexesMolecular contextCellular membranesMembrane environmentQuantitative platformBioanalytical approachesExtraction efficiencyOpen-access databasesProteinMembraneExtraction conditionsNanodiscsTarget MPNative top-down analysis of protein complexes from the membrane
Jung W, Panda A, Lee J, Shaw JB, Gupta, K. Native top-down analysis of protein complexes from the membrane. Nature Chemistry (Under Review)Peer-Reviewed Original ResearchStructure and function of the human apoptotic scramblase Xkr4.
Chakraborty S, Feng Z, Lee S, Alvarenga OE, Panda A, Bruni R, Khelashvili G, Gupta K, Accardi A. Structure and function of the human apoptotic scramblase Xkr4. BioRxiv 2024 PMID: 39149361, DOI: 10.1101/2024.08.07.607004.Peer-Reviewed Original ResearchAuthor Correction: Structure of Geobacter cytochrome OmcZ identifies mechanism of nanowire assembly and conductivity
Gu Y, Guberman-Pfeffer M, Srikanth V, Shen C, Giska F, Gupta K, Londer Y, Samatey F, Batista V, Malvankar N. Author Correction: Structure of Geobacter cytochrome OmcZ identifies mechanism of nanowire assembly and conductivity. Nature Microbiology 2024, 9: 2759-2759. PMID: 38684912, DOI: 10.1038/s41564-024-01702-0.Peer-Reviewed Original ResearchAltmetricConceptsA proteome-wide quantitative platform for nanoscale spatially resolved extraction of membrane proteins into native nanodiscs.
Brown C, Ghosh S, McAllister R, Kumar M, Walker G, Sun E, Aman T, Panda A, Kumar S, Li W, Coleman J, Liu Y, Rothman JE, Bhattacharyya M, Gupta K. A proteome-wide quantitative platform for nanoscale spatially resolved extraction of membrane proteins into native nanodiscs. BioRxiv 2024 PMID: 38405833, DOI: 10.1101/2024.02.10.579775.Peer-Reviewed Original Research In PressImaging nanoscale-spatial oligomeric organization of membrane proteins directly from native membranes at single-molecule resolution
Walker G, Brown C, Ge X, Kumar S, Muzumdar M, Gupta K, Bhattacharyya M. Imaging nanoscale-spatial oligomeric organization of membrane proteins directly from native membranes at single-molecule resolution. Biophysical Journal 2024, 123: 348a. DOI: 10.1016/j.bpj.2023.11.2115.Peer-Reviewed Original Research
2023
Isolation and Lipidomic Profiling of Neuronal Lipid Droplets: Unveiling the Lipid Landscape for insights into Neurodegenerative Disorders.
Kumar M, Knapp JA, Gupta K, Ryan TA. Isolation and Lipidomic Profiling of Neuronal Lipid Droplets: Unveiling the Lipid Landscape for insights into Neurodegenerative Disorders. BioRxiv 2023 PMID: 38168251, DOI: 10.1101/2023.12.13.571527.Peer-Reviewed Original ResearchOligomeric organization of membrane proteins from native membranes at nanoscale spatial and single-molecule resolution
Walker G, Brown C, Ge X, Kumar S, Muzumdar M, Gupta K, Bhattacharyya M. Oligomeric organization of membrane proteins from native membranes at nanoscale spatial and single-molecule resolution. Nature Nanotechnology 2023, 19: 85-94. PMID: 38012273, PMCID: PMC10981947, DOI: 10.1038/s41565-023-01547-4.Peer-Reviewed Original ResearchCitationsAltmetricConceptsMembrane proteinsNative membranesOligomeric organizationDiverse membrane proteinsMembrane protein biologyNative cell membranesTarget membrane proteinsNative membrane environmentSingle-molecule resolutionSingle-molecule platformReceptor tyrosine kinasesOligomeric distributionNative nanodiscsOligomerization statusProtein biologySmall GTPaseGrowth factor bindingMembrane environmentOligomeric assembliesTyrosine kinaseCritical regulatorOncogenic mutationsCell membraneProteinMembraneRoles for diacylglycerol in synaptic vesicle priming and release revealed by complete reconstitution of core protein machinery
Sundaram R, Chatterjee A, Bera M, Grushin K, Panda A, Li F, Coleman J, Lee S, Ramakrishnan S, Ernst A, Gupta K, Rothman J, Krishnakumar S. Roles for diacylglycerol in synaptic vesicle priming and release revealed by complete reconstitution of core protein machinery. Proceedings Of The National Academy Of Sciences Of The United States Of America 2023, 120: e2309516120. PMID: 37590407, PMCID: PMC10450444, DOI: 10.1073/pnas.2309516120.Peer-Reviewed Original ResearchCitationsAltmetricMeSH Keywords and ConceptsConceptsCore protein machineryRelease-ready vesiclesSynaptic vesicle primingVesicle primingProtein machinerySingle-molecule imagingSNAREpin assemblyFunctional intermediatesFunctional reconstitutionMunc13DiacylglycerolCoordinated actionMunc18VesiclesMachineryComplete reconstitutionNew roleSelective effectDetailed characterizationChaperonesRate of caReconstitutionVAMP2ComplexinMutationsStudying Membrane Protein–Lipid Specificity through Direct Native Mass Spectrometric Analysis from Tunable Proteoliposomes
Panda A, Brown C, Gupta K. Studying Membrane Protein–Lipid Specificity through Direct Native Mass Spectrometric Analysis from Tunable Proteoliposomes. Journal Of The American Society For Mass Spectrometry 2023, 34: 1917-1927. PMID: 37432128, PMCID: PMC10932607, DOI: 10.1021/jasms.3c00110.Peer-Reviewed Original ResearchCitationsAltmetricMeSH Keywords and ConceptsConceptsIntegral membrane proteinsMembrane proteinsNative mass spectrometryTrafficking pathwaysPlasma membraneEukaryotic integral membrane proteinsEndoplasmic reticulumBiophysical propertiesMembrane protein assemblySynaptic vesiclesCellular trafficking pathwaysOrganellar membranesLipid specificityTransmembrane proteinProtein assembliesMembrane contextMass spectrometric analysisProteinNative mass spectrometric analysesVAMP2Lipid compositionExogenous ligandsLipid membranesIndividual lipidsMembrane
Academic Achievements & Community Involvement
activity American Society for Mass Spectrometry
Professional OrganizationsMemberDetails2019 - Presentactivity Biophysical Society
Professional OrganizationsMemberDetails2021 - Presentactivity Protein Society
Professional OrganizationsMemberDetails2023 - Presentactivity Nanoscale molecular cartography of the cellular membrane
Oral PresentationTelluride Ion Channel Biophysics WorkshopDetails07/17/2023 - 07/21/2023Telluride, CO, United Stateshonor Emerging Investigator
International AwardAmerican Society for Mass SpectrometryDetails06/01/2023United States
Teaching & Mentoring
Teaching
Didactic MCDB/CBIO630b: Biochemical and Biophysical Approaches in Molecular and Cellular Biology
LecturerLecture SettingDetails4/1/2021 - PresentForGraduate8 Average Instructional Hours Per YearIn this course, we provide an overall of various biochemical and biophysical approaches used in modern research in molecular and cellular biology, ranging from spectroscopic tools, microscopy, to X-ray crystallography. The goal of the course is to make students familiar with these techniques so that they can find relevant materials in their future research. Does not count for graduate course credit for BQBS graduate students.
Didactic MCDB/CBIO901b: Research Skills and Ethics
LecturerLecture SettingDetails3/1/2022 - PresentForGraduate2 Average Instructional Hours Per YearThis course consists of a weekly seminar that covers ethics, writing, and research methods in cellular and molecular biology as well as student presentations (“rotation talks”) of work completed in the third laboratory rotation.
Mentoring
Samantha Shepherd
Postdoc2024 - PresentMeera Chari
Summer Student2024 - 2024Sakeeth Sadhnala
Summer Student2023 - 2023Aalok Bhattacharya
Summer Student2023 - 2023
Willing and Available to Mentor
- Postdoctoral Researcher
- Students
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Locations
221 C
Lab
West Campus Integrative Science & Technology Center
850 West Campus Drive
West Haven, CT 06516