2023
Using Multi-Modal Electronic Health Record Data for the Development and Validation of Risk Prediction Models for Long COVID Using the Super Learner Algorithm
Jin W, Hao W, Shi X, Fritsche L, Salvatore M, Admon A, Friese C, Mukherjee B. Using Multi-Modal Electronic Health Record Data for the Development and Validation of Risk Prediction Models for Long COVID Using the Super Learner Algorithm. Journal Of Clinical Medicine 2023, 12: 7313. PMID: 38068365, PMCID: PMC10707399, DOI: 10.3390/jcm12237313.Peer-Reviewed Original ResearchComposite risk scoreRisk scoreElectronic health recordsAnalyses identified several factorsValidation of risk prediction modelsModerate discriminatory abilityRisk prediction modelPost-acute sequelae of COVID-19Health recordsCombined risk scorePost-acuteIdentification of individualsPrevention effortsSuper Learner algorithmMedical recordsHealthcare challengesPublic healthMedical phenotypesCOVID-19Increased riskPredictive factorsCOVID-19 infectionRecord DataPost-acute sequelaeHigh riskA framework for assessing interactions for risk stratification models: the example of ovarian cancer
Phung M, Lee A, McLean K, Anton-Culver H, Bandera E, Carney M, Chang-Claude J, Cramer D, Doherty J, Fortner R, Goodman M, Harris H, Jensen A, Modugno F, Moysich K, Pharoah P, Qin B, Terry K, Titus L, Webb P, Wu A, Zeinomar N, Ziogas A, Berchuck A, Cho K, Hanley G, Meza R, Mukherjee B, Pike M, Pearce C, Trabert B. A framework for assessing interactions for risk stratification models: the example of ovarian cancer. Journal Of The National Cancer Institute 2023, 115: 1420-1426. PMID: 37436712, PMCID: PMC10637032, DOI: 10.1093/jnci/djad137.Peer-Reviewed Original ResearchConceptsFamily history of ovarian cancerOvarian Cancer Association ConsortiumHistory of ovarian cancerFirst-degree family historyMenopausal statusRisk stratification modelCase-control studyRisk prediction modelOvarian cancerDisease riskAccurate risk stratification modelsStratification modelRisk/protective factorsDepot medroxyprogesterone acetate useProtective factorsFactor analysisRiskComprehensive analysis of interactionsCancerAcetate useUnequivocal riskStatusBreastfeedingAnalysis of interactionsPairwise interactionsA Synthetic Data Integration Framework to Leverage External Summary-Level Information from Heterogeneous Populations
Gu T, Taylor J, Mukherjee B. A Synthetic Data Integration Framework to Leverage External Summary-Level Information from Heterogeneous Populations. Biometrics 2023, 79: 3831-3845. PMID: 36876883, PMCID: PMC10480346, DOI: 10.1111/biom.13852.Peer-Reviewed Original ResearchConceptsCovariate effectsStatistical inferenceHeterogeneity of covariate effectsRegression coefficient estimatesSummary-level informationImprove statistical inferenceInternational studiesOutcome YCovariate informationData integration frameworkStatistical efficiencyCoefficient estimatesPartial informationExternal populationGeneral frameworkIndividual-level dataRisk prediction modelExternal modelPrediction problemInternational study populationMultiple imputationCharacterizing and Predicting Post-Acute Sequelae of SARS CoV-2 Infection (PASC) in a Large Academic Medical Center in the US
Fritsche L, Jin W, Admon A, Mukherjee B. Characterizing and Predicting Post-Acute Sequelae of SARS CoV-2 Infection (PASC) in a Large Academic Medical Center in the US. Journal Of Clinical Medicine 2023, 12: 1328. PMID: 36835863, PMCID: PMC9967320, DOI: 10.3390/jcm12041328.Peer-Reviewed Original ResearchPost-Acute Sequelae of SARS CoV-2 infectionElectronic health record dataPhenotype risk scoreHealth record dataCase-control study designPhenome-wide scanAcademic medical centerRisk prediction modelPost-COVID-19Risk stratification approachStudy designRecord dataRisk scoreHistory of COVID-19Medical CenterCOVID-19Increased riskPre-COVID-19Post-acute sequelaePre-COVID-19 periodRiskPost-COVID-19 periodCohortStratification approachSARS CoV-2 infection
2022
Integrating information from existing risk prediction models with no model details
Han P, Taylor J, Mukherjee B. Integrating information from existing risk prediction models with no model details. Canadian Journal Of Statistics 2022, 51: 355-374. PMID: 37346757, PMCID: PMC10281716, DOI: 10.1002/cjs.11701.Peer-Reviewed Original Research
2018
Informing a Risk Prediction Model for Binary Outcomes with External Coefficient Information
Cheng W, Taylor J, Gu T, Tomlins S, Mukherjee B. Informing a Risk Prediction Model for Binary Outcomes with External Coefficient Information. Journal Of The Royal Statistical Society Series C (Applied Statistics) 2018, 68: 121-139. PMID: 31105344, PMCID: PMC6519970, DOI: 10.1111/rssc.12306.Peer-Reviewed Original ResearchOutcome variable YEfficiency of estimationMeasurement error literatureDistribution of B.Regression coefficientsVariable YRegression modelsBinary outcomesVariable BLogistic regression modelsRisk prediction modelAlternative expressionBinary BImproved estimatesGaussian distributionProstate Cancer Prevention Trial Risk CalculatorProstate cancer antigen 3Risk calculatorStandard errorEstimationPredictive powerAntigen 3RegressionHistorical data