Lab Publications
2024
- A multi-institutional meningioma MRI dataset for automated multi-sequence image segmentation.LaBella D, Khanna O, McBurney-Lin S, Mclean R, Nedelec P, Rashid AS, Tahon NH, Altes T, Baid U, Bhalerao R, Dhemesh Y, Floyd S, Godfrey D, Hilal F, Janas A, Kazerooni A, Kent C, Kirkpatrick J, Kofler F, Leu K, Maleki N, Menze B, Pajot M, Reitman ZJ, Rudie JD, Saluja R, Velichko Y, Wang C, Warman PI, Sollmann N, Diffley D, Nandolia KK, Warren DI, Hussain A, Fehringer JP, Bronstein Y, Deptula L, Stein EG, Taherzadeh M, Portela de Oliveira E, Haughey A, Kontzialis M, Saba L, Turner B, Brüßeler MMT, Ansari S, Gkampenis A, Weiss DM, Mansour A, Shawali IH, Yordanov N, Stein JM, Hourani R, Moshebah MY, Abouelatta AM, Rizvi T, Willms K, Martin DC, Okar A, D'Anna G, Taha A, Sharifi Y, Faghani S, Kite D, Pinho M, Haider MA, Alonso-Basanta M, Villanueva-Meyer J, Rauschecker AM, Nada A, Aboian M, Flanders A, Bakas S, Calabrese E. Sci Data. 2024 May 15; 2024 May 15. PMID: 38750041.
- Impact of (18)F-FDG PET Intensity Normalization on Radiomic Features of Oropharyngeal Squamous Cell Carcinomas and Machine Learning-Generated Biomarkers.Haider SP, Zeevi T, Sharaf K, Gross M, Mahajan A, Kann BH, Judson BL, Prasad ML, Burtness B, Aboian M, Canis M, Reichel CA, Baumeister P, Payabvash S. J Nucl Med. 2024 May 1; 2024 May 1. PMID: 38514087.
- Comparison of Volumetric and 2D Measurements and Longitudinal Trajectories in the Response Assessment of BRAF V600E-Mutant Pediatric Gliomas in the Pacific Pediatric Neuro-Oncology Consortium Clinical Trial.Ramakrishnan D, Brüningk SC, von Reppert M, Memon F, Maleki N, Aneja S, Kazerooni AF, Nabavizadeh A, Lin M, Bousabarah K, Molinaro A, Nicolaides T, Prados M, Mueller S, Aboian MS. AJNR Am J Neuroradiol. 2024 Apr 8; 2024 Apr 8. PMID: 38453411.
- The Brain Tumor Segmentation (BraTS) Challenge 2023: Focus on Pediatrics (CBTN-CONNECT-DIPGR-ASNR-MICCAI BraTS-PEDs).Kazerooni AF, Khalili N, Liu X, Haldar D, Jiang Z, Anwar SM, Albrecht J, Adewole M, Anazodo U, Anderson H, Bagheri S, Baid U, Bergquist T, Borja AJ, Calabrese E, Chung V, Conte GM, Dako F, Eddy J, Ezhov I, Familiar A, Farahani K, Haldar S, Iglesias JE, Janas A, Johansen E, Jones BV, Kofler F, LaBella D, Lai HA, Van Leemput K, Li HB, Maleki N, McAllister AS, Meier Z, Menze B, Moawad AW, Nandolia KK, Pavaine J, Piraud M, Poussaint T, Prabhu SP, Reitman Z, Rodriguez A, Rudie JD, Sanchez-Montano M, Shaikh IS, Shah LM, Sheth N, Shinohara RT, Tu W, Viswanathan K, Wang C, Ware JB, Wiestler B, Wiggins W, Zapaishchykova A, Aboian M, Bornhorst M, de Blank P, Deutsch M, Fouladi M, Hoffman L, Kann B, Lazow M, Mikael L, Nabavizadeh A, Packer R, Resnick A, Rood B, Vossough A, Bakas S, Linguraru MG. ArXiv. 2024 Mar 8; 2024 Mar 8. PMID: 37292481.
- A large open access dataset of brain metastasis 3D segmentations on MRI with clinical and imaging information.Ramakrishnan D, Jekel L, Chadha S, Janas A, Moy H, Maleki N, Sala M, Kaur M, Petersen GC, Merkaj S, von Reppert M, Baid U, Bakas S, Kirsch C, Davis M, Bousabarah K, Holler W, Lin M, Westerhoff M, Aneja S, Memon F, Aboian MS. Sci Data. 2024 Feb 29; 2024 Feb 29. PMID: 38424079.
- Everolimus for Children With Recurrent or Progressive Low-Grade Glioma: Results From the Phase II PNOC001 Trial.Haas-Kogan DA, Aboian MS, Minturn JE, Leary SES, Abdelbaki MS, Goldman S, Elster JD, Kraya A, Lueder MR, Ramakrishnan D, von Reppert M, Liu KX, Rokita JL, Resnick AC, Solomon DA, Phillips JJ, Prados M, Molinaro AM, Waszak SM, Mueller S. J Clin Oncol. 2024 Feb 1; 2023 Nov 17. PMID: 37978951.
- Comparison of volumetric and 2D-based response methods in the PNOC-001 pediatric low-grade glioma clinical trial.von Reppert M, Ramakrishnan D, Brüningk SC, Memon F, Abi Fadel S, Maleki N, Bahar R, Avesta AE, Jekel L, Sala M, Lost J, Tillmanns N, Kaur M, Aneja S, Fathi Kazerooni A, Nabavizadeh A, Lin M, Hoffmann KT, Bousabarah K, Swanson KR, Haas-Kogan D, Mueller S, Aboian MS. Neurooncol Adv. 2024 Jan-Dec; 2023 Dec 27. PMID: 38221978.
2023
- Application of novel PACS-based informatics platform to identify imaging based predictors of CDKN2A allelic status in glioblastomas.Tillmanns N, Lost J, Tabor J, Vasandani S, Vetsa S, Marianayagam N, Yalcin K, Erson-Omay EZ, von Reppert M, Jekel L, Merkaj S, Ramakrishnan D, Avesta A, de Oliveira Santo ID, Jin L, Huttner A, Bousabarah K, Ikuta I, Lin M, Aneja S, Turowski B, Aboian M, Moliterno J. Sci Rep. 2023 Dec 22; 2023 Dec 22. PMID: 38135704.
- Clinical implications of Peri-hematomal edema microperfusion fraction in intracerebral hemorrhage intravoxel incoherent motion imaging - A pilot study.Abou Karam G, Tharmaseelan H, Aboian MS, Malhotra A, Gilmore EJ, Falcone GJ, de Havenon A, Sheth KN, Payabvash S. J Stroke Cerebrovasc Dis. 2023 Nov; 2023 Sep 20. PMID: 37738914.
- Systematic Literature Review of Machine Learning Algorithms Using Pretherapy Radiologic Imaging for Glioma Molecular Subtype Prediction.Lost J, Verma T, Jekel L, von Reppert M, Tillmanns N, Merkaj S, Petersen GC, Bahar R, Gordem A, Haider MA, Subramanian H, Brim W, Ikuta I, Omuro A, Conte GM, Marquez-Nostra BV, Avesta A, Bousabarah K, Nabavizadeh A, Kazerooni AF, Aneja S, Bakas S, Lin M, Sabel M, Aboian M. AJNR Am J Neuroradiol. 2023 Oct. PMID: 37770204.
- Local Economic Considerations in Selecting Artificial Intelligence Tools for Implementation.Davis MA, Ramakrishnan D, Sala M, Aboian M. J Am Coll Radiol. 2023 Oct; 2023 Aug 19. PMID: 37604325.
- PACS-Integrated Tools for Peritumoral Edema Volumetrics Provide Additional Information to RANO-BM-Based Assessment of Lung Cancer Brain Metastases after Stereotactic Radiotherapy: A Pilot Study.Kaur M, Cassinelli Petersen G, Jekel L, von Reppert M, Varghese S, Dixe de Oliveira Santo I, Avesta A, Aneja S, Omuro A, Chiang V, Aboian M. Cancers (Basel). 2023 Sep 30; 2023 Sep 30. PMID: 37835516.
- Evolution and implementation of radiographic response criteria in neuro-oncology.Ramakrishnan D, von Reppert M, Krycia M, Sala M, Mueller S, Aneja S, Nabavizadeh A, Galldiks N, Lohmann P, Raji C, Ikuta I, Memon F, Weinberg BD, Aboian MS. Neurooncol Adv. 2023 Jan-Dec; 2023 Sep 13. PMID: 37860269.
- A Large Open Access Dataset of Brain Metastasis 3D Segmentations with Clinical and Imaging Feature Information.Ramakrishnan D, Jekel L, Chadha S, Janas A, Moy H, Maleki N, Sala M, Kaur M, Petersen GC, Merkaj S, von Reppert M, Baid U, Bakas S, Kirsch C, Davis M, Bousabarah K, Holler W, Lin M, Westerhoff M, Aneja S, Memon F, Aboian MS. ArXiv. 2023 Sep 12; 2023 Sep 12. PMID: 37744461.
- The Brain Tumor Segmentation (BraTS) Challenge 2023: Brain MR Image Synthesis for Tumor Segmentation (BraSyn).Li HB, Conte GM, Anwar SM, Kofler F, Ezhov I, van Leemput K, Piraud M, Diaz M, Cole B, Calabrese E, Rudie J, Meissen F, Adewole M, Janas A, Kazerooni AF, LaBella D, Moawad AW, Farahani K, Eddy J, Bergquist T, Chung V, Shinohara RT, Dako F, Wiggins W, Reitman Z, Wang C, Liu X, Jiang Z, Familiar A, Johanson E, Meier Z, Davatzikos C, Freymann J, Kirby J, Bilello M, Fathallah-Shaykh HM, Wiest R, Kirschke J, Colen RR, Kotrotsou A, Lamontagne P, Marcus D, Milchenko M, Nazeri A, Weber MA, Mahajan A, Mohan S, Mongan J, Hess C, Cha S, Villanueva-Meyer J, Colak E, Crivellaro P, Jakab A, Albrecht J, Anazodo U, Aboian M, Yu T, Chung V, Bergquist T, Eddy J, Albrecht J, Baid U, Bakas S, Linguraru MG, Menze B, Iglesias JE, Wiestler B. ArXiv. 2023 Jun 28; 2023 Jun 28. PMID: 37608932.
- The Brain Tumor Segmentation (BraTS-METS) Challenge 2023: Brain Metastasis Segmentation on Pre-treatment MRI.Moawad AW, Janas A, Baid U, Ramakrishnan D, Jekel L, Krantchev K, Moy H, Saluja R, Osenberg K, Wilms K, Kaur M, Avesta A, Pedersen GC, Maleki N, Salimi M, Merkaj S, von Reppert M, Tillmans N, Lost J, Bousabarah K, Holler W, Lin M, Westerhoff M, Maresca R, Link KE, Tahon NH, Marcus D, Sotiras A, LaMontagne P, Chakrabarty S, Teytelboym O, Youssef A, Nada A, Velichko YS, Gennaro N, Cramer J, Johnson DR, Kwan BYM, Petrovic B, Patro SN, Wu L, So T, Thompson G, Kam A, Perez-Carrillo GG, Lall N, Albrecht J, Anazodo U, Lingaru MG, Menze BH, Wiestler B, Adewole M, Anwar SM, Labella D, Li HB, Iglesias JE, Farahani K, Eddy J, Bergquist T, Chung V, Shinohara RT, Dako F, Wiggins W, Reitman Z, Wang C, Liu X, Jiang Z, Van Leemput K, Piraud M, Ezhov I, Johanson E, Meier Z, Familiar A, Kazerooni AF, Kofler F, Calabrese E, Aneja S, Chiang V, Ikuta I, Shafique U, Memon F, Conte GM, Bakas S, Rudie J, Aboian M. ArXiv. 2023 Jun 1; 2023 Jun 1. PMID: 37396600.
- PET/MRI Applications in Pediatric Epilepsy.Pedersen C, Aboian M, Messina SA, Daldrup-Link H, Franceschi AM. World J Nucl Med. 2023 Jun; 2023 Apr 28. PMID: 37223623.
- The Brain Tumor Segmentation (BraTS) Challenge 2023: Glioma Segmentation in Sub-Saharan Africa Patient Population (BraTS-Africa).Adewole M, Rudie JD, Gbdamosi A, Toyobo O, Raymond C, Zhang D, Omidiji O, Akinola R, Suwaid MA, Emegoakor A, Ojo N, Aguh K, Kalaiwo C, Babatunde G, Ogunleye A, Gbadamosi Y, Iorpagher K, Calabrese E, Aboian M, Linguraru M, Albrecht J, Wiestler B, Kofler F, Janas A, LaBella D, Kzerooni AF, Li HB, Iglesias JE, Farahani K, Eddy J, Bergquist T, Chung V, Shinohara RT, Wiggins W, Reitman Z, Wang C, Liu X, Jiang Z, Familiar A, Van Leemput K, Bukas C, Piraud M, Conte GM, Johansson E, Meier Z, Menze BH, Baid U, Bakas S, Dako F, Fatade A, Anazodo UC. ArXiv. 2023 May 30; 2023 May 30. PMID: 37396608.
- Comparison of whole-body DW-MRI with 2-[(18)F]FDG PET for staging and treatment monitoring of children with Langerhans cell histiocytosis.Baratto L, Nyalakonda R, Theruvath AJ, Sarrami AH, Hawk KE, Rashidi A, Shen S, States L, Aboian M, Jeng M, Daldrup-Link HE. Eur J Nucl Med Mol Imaging. 2023 May; 2023 Jan 31. PMID: 36717409.
- Artificial Intelligence for Neuroimaging and Musculoskeletal Radiology: Overview of Current Commercial Algorithms.Berson ER, Aboian MS, Malhotra A, Payabvash S. Semin Roentgenol. 2023 Apr; 2023 Mar 31. PMID: 37087138.
- Automated tumor segmentation and brain tissue extraction from multiparametric MRI of pediatric brain tumors: A multi-institutional study.Fathi Kazerooni A, Arif S, Madhogarhia R, Khalili N, Haldar D, Bagheri S, Familiar AM, Anderson H, Haldar S, Tu W, Chul Kim M, Viswanathan K, Muller S, Prados M, Kline C, Vidal L, Aboian M, Storm PB, Resnick AC, Ware JB, Vossough A, Davatzikos C, Nabavizadeh A. Neurooncol Adv. 2023 Jan-Dec; 2023 Mar 16. PMID: 37051331.
- ImmunoPET Imaging Identifies the Optimal Timepoint for Combination Therapy in Xenograft Models of Triple-Negative Breast Cancer.Li Z, Belitzky E, Blaha O, Cavaliere A, Katz SR, Aboian M, Melegari L, Rajabimoghadam K, Kurpiewski S, Zhu X, Marquez-Nostra B. Cancers (Basel). 2023 Mar 3; 2023 Mar 3. PMID: 36900378.
- Comparing 3D, 2.5D, and 2D Approaches to Brain Image Auto-Segmentation.Avesta A, Hossain S, Lin M, Aboian M, Krumholz HM, Aneja S. Bioengineering (Basel). 2023 Feb 1; 2023 Feb 1. PMID: 36829675.
- Brain PET Imaging: Approach to Cognitive Impairment and Dementia.Spano M, Roytman M, Aboian M, Saboury B, Franceschi A, Chiang GC. PET Clin. 2023 Jan. PMID: 36442959.
- Spectrum of qualitative and quantitative imaging of pilomyxoid, intermediate pilomyxoid and pilocytic astrocytomas in relation to their genetic alterations.Fadel SA, von Reppert M, Kazarian E, Omay EZE, Marks A, Linder N, Hoffmann KT, Darbinyan A, Huttner A, Aboian MS. Neuroradiology. 2023 Jan; 2022 Aug 19. PMID: 35984480.
2022
- Clinical implementation of artificial intelligence in neuroradiology with development of a novel workflow-efficient picture archiving and communication system-based automated brain tumor segmentation and radiomic feature extraction.Aboian M, Bousabarah K, Kazarian E, Zeevi T, Holler W, Merkaj S, Cassinelli Petersen G, Bahar R, Subramanian H, Sunku P, Schrickel E, Bhawnani J, Zawalich M, Mahajan A, Malhotra A, Payabvash S, Tocino I, Lin M, Westerhoff M. Front Neurosci. 2022; 2022 Oct 13. PMID: 36312024.
- PET Image Denoising using a Deep-Learning Method for Extremely Obese Patients.Liu H, Yousefi H, Mirian N, Lin M, Menard D, Gregory M, Aboian M, Boustani A, Chen MK, Saperstein L, Pucar D, Kulon M, Liu C. IEEE Trans Radiat Plasma Med Sci. 2022 Sep; 2021 Dec 2. PMID: 37284026.
- Real-time PACS-integrated longitudinal brain metastasis tracking tool provides comprehensive assessment of treatment response to radiosurgery.Cassinelli Petersen G, Bousabarah K, Verma T, von Reppert M, Jekel L, Gordem A, Jang B, Merkaj S, Abi Fadel S, Owens R, Omuro A, Chiang V, Ikuta I, Lin M, Aboian MS. Neurooncol Adv. 2022 Jan-Dec; 2022 Jul 26. PMID: 36043121.
- Identifying clinically applicable machine learning algorithms for glioma segmentation: recent advances and discoveries.Tillmanns N, Lum AE, Cassinelli G, Merkaj S, Verma T, Zeevi T, Staib L, Subramanian H, Bahar RC, Brim W, Lost J, Jekel L, Brackett A, Payabvash S, Ikuta I, Lin M, Bousabarah K, Johnson MH, Cui J, Malhotra A, Omuro A, Turowski B, Aboian MS. Neurooncol Adv. 2022 Jan-Dec; 2022 Jun 14. PMID: 36071926.
- Machine Learning Tools for Image-Based Glioma Grading and the Quality of Their Reporting: Challenges and Opportunities.Merkaj S, Bahar RC, Zeevi T, Lin M, Ikuta I, Bousabarah K, Cassinelli Petersen GI, Staib L, Payabvash S, Mongan JT, Cha S, Aboian MS. Cancers (Basel). 2022 May 25; 2022 May 25. PMID: 35681603.
- Clinical Evaluation of Nuclear Imaging Agents in Breast Cancer.Li Z, Aboian MS, Zhu X, Marquez-Nostra B. Cancers (Basel). 2022 Apr 23; 2022 Apr 23. PMID: 35565232.
- Machine Learning Models for Classifying High- and Low-Grade Gliomas: A Systematic Review and Quality of Reporting Analysis.Bahar RC, Merkaj S, Cassinelli Petersen GI, Tillmanns N, Subramanian H, Brim WR, Zeevi T, Staib L, Kazarian E, Lin M, Bousabarah K, Huttner AJ, Pala A, Payabvash S, Ivanidze J, Cui J, Malhotra A, Aboian MS. Front Oncol. 2022; 2022 Apr 22. PMID: 35530302.
- Machine Learning in Differentiating Gliomas from Primary CNS Lymphomas: A Systematic Review, Reporting Quality, and Risk of Bias Assessment.Cassinelli Petersen GI, Shatalov J, Verma T, Brim WR, Subramanian H, Brackett A, Bahar RC, Merkaj S, Zeevi T, Staib LH, Cui J, Omuro A, Bronen RA, Malhotra A, Aboian MS. AJNR Am J Neuroradiol. 2022 Apr; 2022 Mar 31. PMID: 35361577.
- Brain Tumor Imaging: Applications of Artificial Intelligence.Afridi M, Jain A, Aboian M, Payabvash S. Semin Ultrasound CT MR. 2022 Apr; 2022 Feb 11. PMID: 35339256.
- Radiomics: A Primer on Processing Workflow and Analysis.Avery E, Sanelli PC, Aboian M, Payabvash S. Semin Ultrasound CT MR. 2022 Apr; 2022 Feb 12. PMID: 35339254.
- Neuropathology of Chiari Malformation II with Chromosome X Alterations: An Autopsy Study in a 17-Month-Old and Review of Literature.Wang X, Habet V, Aboian M, Leelatian N, McGuone D, Morotti R, Kandil S, Darbinyan A. J Neuropathol Exp Neurol. 2022 Mar 29. PMID: 35139536.
- Machine Learning Applications for Differentiation of Glioma from Brain Metastasis-A Systematic Review.Jekel L, Brim WR, von Reppert M, Staib L, Cassinelli Petersen G, Merkaj S, Subramanian H, Zeevi T, Payabvash S, Bousabarah K, Lin M, Cui J, Brackett A, Mahajan A, Omuro A, Johnson MH, Chiang VL, Malhotra A, Scheffler B, Aboian MS. Cancers (Basel). 2022 Mar 8; 2022 Mar 8. PMID: 35326526.
- Radiation Necrosis with Proton Therapy in a Patient with Aarskog-Scott Syndrome and Medulloblastoma.Puthenpura V, DeNunzio NJ, Zeng X, Giantsoudi D, Aboian M, Ebb D, Kahle KT, Yock TI, Marks AM. Int J Part Ther. 2022 Winter; 2021 Jul 29. PMID: 35127977.
2021
- Trends in Development of Novel Machine Learning Methods for the Identification of Gliomas in Datasets That Include Non-Glioma Images: A Systematic Review.Subramanian H, Dey R, Brim WR, Tillmanns N, Cassinelli Petersen G, Brackett A, Mahajan A, Johnson M, Malhotra A, Aboian M. Front Oncol. 2021; 2021 Dec 23. PMID: 35004312.
- Correction to: Incidence and characteristics of metastatic intracranial lesions in stage III and IV melanoma: a single institute retrospective analysis.Sandhu MRS, Chiang VL, Tran T, Yu JB, Weiss SA, Goldberg SB, Aboian MS, Kluger HM, Mahajan A. J Neurooncol. 2021 Sep. PMID: 34403041.
- Incidence and characteristics of metastatic intracranial lesions in stage III and IV melanoma: a single institute retrospective analysis.Sandhu MRS, Chiang VL, Tran T, Yu JB, Weiss SA, Goldberg SB, Aboian MS, Kluger HM, Mahajan A. J Neurooncol. 2021 Sep; 2021 Aug 5. PMID: 34351544.
- Type of bony involvement predicts genomic subgroup in sphenoid wing meningiomas.Jin L, Youngblood MW, Gupte TP, Vetsa S, Nadar A, Barak T, Yalcin K, Aguilera SM, Mishra-Gorur K, Blondin NA, Gorelick E, Omay SB, Pointdujour-Lim R, Judson BL, Alperovich M, Aboian MS, McGuone D, Gunel M, Erson-Omay Z, Fulbright RK, Moliterno J. J Neurooncol. 2021 Sep; 2021 Aug 4. PMID: 34350560.
- Author Correction: Topographic correlates of driver mutations and endogenous gene expression in pediatric diffuse midline gliomas and hemispheric high-grade gliomas.Kazarian E, Marks A, Cui J, Darbinyan A, Tong E, Mueller S, Cha S, Aboian MS. Sci Rep. 2021 Aug 11; 2021 Aug 11. PMID: 34381151.
- Letter regarding "Contribution of PET imaging to radiotherapy planning and monitoring in glioma patients-a report of the PET/RANO group": 18F-fluciclovine and target volume delineation.Kotecha R, Aboian M, Nabavizadeh SA, Parent EE, Trifiletti DM, Chao ST. Neuro Oncol. 2021 Aug 2. PMID: 34081125.
- Topographic correlates of driver mutations and endogenous gene expression in pediatric diffuse midline gliomas and hemispheric high-grade gliomas.Kazarian E, Marks A, Cui J, Darbinyan A, Tong E, Mueller S, Cha S, Aboian MS. Sci Rep. 2021 Jul 13; 2021 Jul 13. PMID: 34257334.
- Theranostics in Brain Tumors.Shooli H, Nemati R, Ahmadzadehfar H, Aboian M, Jafari E, Jokar N, Nabipour I, Dadgar H, Gholamrezanezhad A, Larvie M, Assadi M. PET Clin. 2021 Jul. PMID: 34053584.
- Maximizing the use of batch production of (18)F-FDOPA for imaging of brain tumors to increase availability of hybrid PET/MR imaging in clinical setting.Aboian M, Barajas R, Shatalov J, Ravanfar V, Bahroos E, Tong E, Taylor JW, Bush NO, Sneed P, Seo Y, Cha S, Hernandez-Pampaloni M. Neurooncol Pract. 2021 Feb; 2020 Oct 14. PMID: 33664973.
- (124)I-MIBG PET/CT to Monitor Metastatic Disease in Children with Relapsed Neuroblastoma.Aboian MS, Huang SY, Hernandez-Pampaloni M, Hawkins RA, VanBrocklin HF, Huh Y, Vo KT, Gustafson WC, Matthay KK, Seo Y. J Nucl Med. 2021 Jan; 2020 May 15. PMID: 32414950.
2020
- Phase I study of vemurafenib in children with recurrent or progressive BRAF(V600E) mutant brain tumors: Pacific Pediatric Neuro-Oncology Consortium study (PNOC-002).Nicolaides T, Nazemi KJ, Crawford J, Kilburn L, Minturn J, Gajjar A, Gauvain K, Leary S, Dhall G, Aboian M, Robinson G, Long-Boyle J, Wang H, Molinaro AM, Mueller S, Prados M. Oncotarget. 2020 May 26; 2020 May 26. PMID: 32523649.
- Machine Learning Decision Tree Models for Differentiation of Posterior Fossa Tumors Using Diffusion Histogram Analysis and Structural MRI Findings.Payabvash S, Aboian M, Tihan T, Cha S. Front Oncol. 2020; 2020 Feb 7. PMID: 32117728.
2019
- Diffusion Characteristics of Pediatric Diffuse Midline Gliomas with Histone H3-K27M Mutation Using Apparent Diffusion Coefficient Histogram Analysis.Aboian MS, Tong E, Solomon DA, Kline C, Gautam A, Vardapetyan A, Tamrazi B, Li Y, Jordan CD, Felton E, Weinberg B, Braunstein S, Mueller S, Cha S. AJNR Am J Neuroradiol. 2019 Nov; 2019 Nov 6. PMID: 31694820.
Book Chapters
Book Chapters:
- Pedersen C, Messina S, Daldrup-Link H, Aboian M (2021) “PET/MRI Applications in Neuroimaging: Overview of Pediatric Neuroimaging” Springer
- Pedersen C, Messina S, Daldrup-Link H, Aboian M (2021) “PET/MRI Applications in Neuroimaging: Pediatric Epilepsy Neuroimaging” Springer
- Pedersen C, Messina S, Daldrup-Link H, Aboian M (2021) “PET/MRI Applications in Neuroimaging: Pediatric Oncologic Brain and Head and Neck Neuroimaging” Springer
- Pedersen C, Messina S, Daldrup-Link H, Aboian M (2021) “PET/MRI Applications in Neuroimaging: Pediatric Oncologic Spine Neuroimaging” Springer
- Shooli H, Assadi M, Nabavizadeh SA, Aboian M (2021) “Amino Acid PET Imaging applications in Neuro-Oncology” Springer
- Shooli H, Aboian M (2021) “FDG PET/MRI Imaging applications in Neuro-Oncology” Springer
Abstracts and Presentations
- Aboian M, Bousabarah K, Holler W, Kazarian E, Mahajan A, Malhotra A, Lin M, Westerhoff M “A workflow efficient PACS based automated brain tumor segmentation and radiomic feature extraction” ASNR Oral Presentation
- Kazarian M, Cui J, Mahajan A, Aboian M “Comprehensive analysis of driver mutation profile in a cohort of lung cancer patients using targeted gene panel analysis” ASNR Oral Presentation, Cornelius Dyke Semi-Finalist
- Subramanian H, Brim WR, Brackett A, Hans M, Johnson M, Malhotra A, Aboian M “How to begin your first AI project: A tutorial based on the diagnosis and management of glioma” ASNR Educational Exhibit
- Kazarian W, Marks A, Cui J, Darbinian A, Tong E, Kline C, Cha S, Aboian M “Topographical expression patterns of genes implicated as driver mutations in pediatric high grade gliomas” ASNR Oral Presentation
- Najmi Varzaneh F, Cui J, Aboian M “Time is of the essence: Longitudinal Imaging Characteristics of High Grade Gliomas before and after Immunotherapy” ASNR Oral Presentation
- Najmi Varzaneh F, Aboian M “Deciphering the clinical trials of immunotherapy in High-grade Gliomas: What a Neuroradiologist Needs to Know.” ASNR Educational Exhibit, Certificate of Merit Award
- Lee M, Brackett A, Brim W, Aboian M, Johnson M “Endovascular devices for the treatment of intracranial aneurysms and post procedure imaging”, ASNR Educational Exhibit
- Sikder J, Mahajan A, Aboian M “Immunotherapy Clinical Trials in Melanoma: Imaging Melanoma Metastatic Disease during Treatment with Immunotherapy”, ASNR Educational Exhibit
- Kazarian E, Port J, Aboian M “Novel Machine learning method for clinically significant cortical lesion detection in multiple sclerosis”, ASNR Oral Presentation
- Pedersen C, Messina G, Daldrup-Link H, Franeschi A, Aboian MS “PET/MRI in pediatric imaging: primer for implementation in clinical practice and research” ASNR Educational Exhibit, Summa Cum Laude Award
- Kazarian EK, Aboian MS, Tillema JM, Krecke KN, Morris PP, Cohen A, Dahl DR, Singh M, Port JD “Novel machine learning method for clinically significant cortical lesion detection in multiple sclerosis” ISMRM, Oral Presentation
- Verma T, Lost JP, Tillmanns NJ, Brim WR, Subramanian H, Ikuta I, Bronen R, Zucconi W, Lin M, Bousabarah K, Johnson MH, Cui J, Malhotra A, Sabel M, Aboian MS “Classification of Glioma Molecular Subtype via Artificial Intelligence Algorithms using Pre-Therapy MR Imaging: A Systematic Literature Review” SIIM, Oral presentation
- Kazarian M, Cui J, Tocino I, Mahajan A, Aboian M OTHR-11 “Comprehensive analysis of Driver Mutation Profile in a Cohort of Lung Cancer Patients Using Targeted Gene Panel Analysis with Focus on Brain Metastatic Disease” SNO Brain Metastases Neuro-Oncology Advances, Volume 3, Issue Supplement_3, August 2021, Page iii16, https://doi.org/10.1093/noajnl/vdab071.066
- Brim WR, Jekel L, Cassinelli Petersen G, Subramanian H, Zeevi T, Payabvash S, Bousabarah K, Lin M, Cui J, Brackett A, Malhotra A, Johnson M, Mahajan A, Aboian M OTHR-12. “The development of machine learning algorithms for the differentiation of glioma and brain metastases – a systematic review” SNO Brain Metastases Neuro-Oncology Advances, Volume 3, Issue Supplement_3, August 2021, Page iii17, https://doi.org/10.1093/noajnl/vdab071.067
- Jang B, Lin M, Owens R, Bousabarah K, Mahajan A, Abi Fadel S, Ikuta I, Tocino I, Aboian M OTHR-06. “PACS Lesion Tracking Tool provides real time automatic information on brain tumor metastasis growth curves and RECIST criteria” SNO Brain Metastases Neuro-Oncology Advances, Volume 3, Issue Supplement_3, August 2021, Page iii15, https://doi.org/10.1093/noajnl/vdab071.061
- Jekel L, Brim WR, Cassinelli Petersen G, Subramanian H, Zeevi T, Payabvash S, Bousabarah K, Lin M, Cui J, Brackett A, Johnson M, Malhotra A, Aboian M OTHR-15. “Assessment of TRIPOD adherence in articles developing machine learning models for differentiation of glioma from brain metastasis” SNO Brain Metastases Neuro-Oncology Advances, Volume 3, Issue Supplement_3, August 2021, Pages iii17–iii18, https://doi.org/10.1093/noajnl/vdab071.070
- Bahar R, Merkaj S, Aboian MS “Machine learning models for classifying high-and low-grade gliomas: A systematic review and quality of reporting analysis” Eastern Neuroradiology Annual Meeting, Oral Presentation
- Cassinelli Petersen G, Jang B, Jekel L, Lin M, Owens R, Bousabarah K, Mahajan A, Abi Fadel S, Ikuta I, Tocino I, Aboian M “Characterization Of Heterogenous Response To Treatment of Brain Metastases Using Growth Curves In PACS-Integrated Lesion Tracking Tool” Eastern Neuroradiology Annual Meeting, Oral Presentation
- Verma T, Lost JP, Tillmanns NJ, Brim WR, Subramanian H, Ikuta I, Bronen R, Zucconi W, Lin M, Bousabarah K, Johnson MH, Cui J, Malhotra A, Sabel M, Aboian MS “Classification of Glioma Molecular Subtype via Artificial Intelligence Algorithms using Pre-Therapy MR Imaging: A Systematic Literature Review” Eastern Neuroradiology Annual Meeting, Oral Presentation
- Merkaj S, Bousabarah K, Zeevi T, Lin M, Aboian MS “PACS based glioma segmentation and grade prediction for clinical implementation” ASFNR-ASNR AI workshop
- Cassinelli Petersen G, Merkaj S, Shatalov J, Verma T, Brim WR, Zeevi T, Subramanian H, Brackett A, Cui J, Johnson M, Malhotra A, Aboian MS “Machine Learning models for differentiation of gliomas versus primary CNS lymphomas – A systematic review” ASFNR Poster presentation
- Merkaj S, Bahar R, Cassinelli Petersen G, Tillmanns N, Subramanian H, Brim WR, Zeevi T, Staib L, Kazarian E, Lin M, Bousabarah K, Pala A, Payabvash S, Ivanidze J, Cui J, Tocino I, Malhotra A, Aboian MS “Machine learning models for classifying high – and low-grade gliomas: A systematic review and quality of reporting analysis” ASFNR Poster presentation
- Cassinelli Petersen G, Jang B, Jekel L, Lin M, Owens R, Bousabarah K, Mahajan A, Abi Fadel S, Ikuta I, Tocino I, Aboian M “Characterization of heterogeneous response to treatment of brain metastases using growth curves in PACS-integrated Lesion Tracking Tool” ASFNR Oral Presentation
- Merkaj S, Bahar RC, Brim WR, Subramanian H, Zeevi T, Kazarian E, Lin M, Bousabarah K, Payabvash S, Ivanidze J, Cui J, Tocino I, Malhotra A, Aboian M “Machine learning glioma grade prediction literature: A TRIPOD analysis of reporting quality” SNO Poster presentation
- Cassinelli Petersen G, Shatalov J, Brim WR, Subramanian H, Brackett A, Cui J, Johnson M, Malhotra A, Aboian M “A systematic review on the development of machine learning models for differentiating PCNSL from Gliomas” SNO Poster presentation
- Bahar RC, Merkaj S, Brim WR, Subramanian H, Zeevi T, Kazarian E, Lin M, Bousabarah K, Payabvash S, Ivanidze J, Cui J, Tocino I, Malhotra A, Aboian M “Machine learning Methods in Glioma Grade Prediction: A systematic review” SNO Poster presentation
- Lost JP, Verma T, Tillmans NJ, Brim WR, Subramanian H, Ikuta I, Bronen R, Zucconi W, Lin M, Bousabarah K, Johnson MH, Cui J, Malhotra A, Sabel M, Aboian MS “Systematic literature review of artificial intelligence algorithms using pre-therapy MR imaging for glioma molecular subtype classification” SNO Poster presentation
- Tillmans N, Lum A, Brim WR, Subramanian H, Payabvash S, Ikuta I, Lin M, Bousabarah K, Johnson M, Cui J, Malhotra A, Turowski B, Aboian MS “Measuring adherence to TRIPOD of Artificial Intelligence papers in the glioma segmentation” SNO Poster presentation
- Tillmans N, Lum A, Brim WR, Subramanian H, Payabvash S, Ikuta I, Lin M, Bousabarah K, Johnson M, Cui J, Malhotra A, Turowski B, Aboian MS “Identifying clinically applicable machine learning algorithms for glioma segmentation using a systematic literature review” SNO Poster presentation
- Shatalov J, Verma T, Subramanian H, Brim WR, Bazaar J, Johnson M, Aboian M “Systematic review of literature evaluating machine learning algorithms to develop outcome prediction models in gliomas using molecular imaging with FDG and Amino Acid PET” SNO Poster presentation
- Shooli H, Asadi M, Aboian MS “Amino Acid PET-MRI in Gliomas: A review from molecular principles to clinical applications” RSNA Educational exhibit
- Tillmans NJ, Lum AE, Brim WR, Subramanian H, Payabvash S, Ikuta I, Lin M, Bousabarah K, Johnson MH, Cui J, Malhotra A, Aboian MS “Identifying clinically applicable machine learning algorithms for glioma segmentation using a systematic literature review” RSNA Poster presentation
- Tillmans NJ, Lum AE, Brim WR, Subramanian H, Payabvash S, Ikuta I, Lin M, Bousabarah K, Johnson MH, Cui J, Malhotra A, Aboian MS “Measuring adherence to TRIPOD of artificial intelligence papers in the glioma segmentation” RSNA Poster presentation, RSNA Trainee Award
- Subramanian H, Dey R, Brim WR, Brackett A, Mahajan A, Malhotra A, Aboian M “Trends in development of novel machine learning methods for segmentation of gliomas in datasets that include non-glioma images: Systematic Review” RSNA Poster presentation
- Jekel L, Brim WR, Cassinelli Petersen GI, Subramanian H, Zeevi T, Payabvash S, Bousabarah K, Lin M, Cui J, Johnson MH, Malhotra A, Scheffler B, Aboian MS “Assessment of TRIPOD adherence in articles applying machine learning for differentiation of glioma from brain metastasis” RSNA Poster presentation