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Recent Publications of Interest

2003

  • Bertucci, F., Viens, P., Hingamp, P., Nasser, V., Houlgatie, R., Birnbaum, D. (2003) Breast Cancer Revisited using DNA Array-Based Gene Expression Profiling. Int. J. Cancer: 103, 565-571.
  • Schmidt, U., Begley, C.G. (2003) Medicine in focus: Cancer diagnosis and microarrays. Int J Biochem Cell Biol 35, 119-124
  • Sanchez-Carbayo M. (2003) Use of high-throughput DNA microarrays to identify biomarkers for bladder cancer. Clin Chem: 49(1), 23-31
  • Zbynek Bozdech, Jingchun Zhu, Marcin P Joachimiak, Fred E Cohen, Brian Pulliam and Joseph L DeRisi. (2003) Expression profiling of the schizont and trophozoite stages of Plasmodium falciparum with a long-oligonucleotide microarray. Genome Biology 2003, Volume 4, Issue 2, Article R9.

2002

  • Lacroix, M., Zammatteo, N., Remade, J., Leclercq, G. (2002) A low-density DNA microarray for analysis of markers in breast cancer. Int J Biol Markers: 17(1), 5-23
  • Gruvberger, S.K., Ringner, M., Eden, P., Borg, A., Ferno, M., Peterson, C., Meltzer, P.S. (2002) Expression profiling to predict outcome in breast cancer: the influence of sample selection. Breast Cancer Res: 5(1), 23-26

2001

  • Halgren, Robert G., Fielden, Mark R., Fong, Cora J., and Zacharewski, Timothy R. (2001) Assessment of clone identity and sequence fidelity for 1189 IMAGE cDNA clones. Nucleic Acids Research, 2001, Vol. 29, No. 2, 582-588.
  • Pradet-Bladade, Berengere; Boulme, Florence; Beug, Hartmut; Mullnur, Ernst W.; and Garcia-Sanz, Jose A. (2001) Translation control: bridging the gap between genomics and proteomics? TRENDS in Biochemical Sciences, Vol. 26, No. 4, 225-229.
  • Kellam, Paul (2001) Microarray gene expression database; progress towards an international repository of gene expression data. Genome Biology 2001, 2(5):reports4011.1-4011.3.
  • Stuart, Robert O., Bush, Kevin T., and Nigam, Sanjay K. (2001) Changes in global gene expression patterns during development and maturation of the rat kidney. Proc. Natl. Acad. Sci. USA, Vol. 98, Issue 10, 5649-5654, May 8, 2001.
  • Tseng, George C., Oh, Min-Kyu, Rohlin, Lars, Liao, James C., and Wong, Wing Hung. (2001) Issues in cDNA microarray analysis: quality filtering, channel normalization, models of variations and assessment of gene effects. Nucleic Acids Research, Vol. 29, No. 12, 2549-2557.
  • Ken-ichi Yoshida, Kazuo Kobayashi, Yasuhiko Miwa, Choong-Min Kang, Masayuki Matsunaga, Hirotake Yamaguchi, Shigeo Tojo, Mami Yamamoto, Ryoko Nishi, Maotake Ogasawara, Tatsuo Nakayama and Yasutaro Fujita. (2001) Combined transcriptome and proteome analysis as a powerful approach to study genes under glucose repression in Bacillus subtilis. Nucleic Acids Research, Vol. 29, No. 3, 683-692.

2000

  • Arfin, S., Long, A., Ito, E., Tolleri, L., Riehle, M.Paegle, E., and Hatfield, G. Global gene expression profiling in Escherichia coli K12: the effects of integration host factor (2000). J. Biol. Chem., 275, 29672-29684.
  • Grills, G., Griffin, C., Lilley, K., Massimi, A., Bao, Y., and VanEe, J. (2000) The state of the art of microarray analysis: a profile of microarray laboratories. 1999/2000 ABRF Microarray Research Group Study.
  • Hughes, T.R., Marton, M..J., Jones, A.R., Roberts, C.J., Stoughton ,R,. Armour, C.D., Bennett, H.A., Coffey, E., Dai, H., He,Y.D., Kidd, M.J., King, A.M., Meyer, M.R, Slade, D., Lum, P.Y., Stepaniants, S.B., Shoemaker, D.D., Gachotte, D., Chakraburtty, K., Simon, J., Bard, M., Friend, S.H. Functional discovery via a compendium of expression profiles. (2000) Cell, 102,109-26.
  • Kane, Michael D., Jatkoe, Timothy A., Stumpf, Craig R., Lu, Jia, Thomas, Jeffrey D., Madore, Thomas and Steven J. (2000) Assessment of the sensitivity and specificity of oligonucleotide (50mer) microarrays, 2000, Vol. 28, No. 22, 4452-4457.
  • Lee, M-L, Kuo, F.C., Whitmore, G.A., and Sklar, J. (2000) Importance of replication in microarray gene expression studies: statistical methods and evidence from repetitive cDNA hybridizations. Proc. Natl. Acad. Sci. 97, 9834-9839.
  • Lemkin, Peter F., Thornwall, Gregory C., Walton, Katherine D., Hennighausen, Lothar (2000) The Microarray Explorer tool for data mining of cDNA microarrays: application for the mammary gland. Nucleic Acids Research, 2000, Vol. 28, No. 22, 4452-4459.
  • Tanaka, T.S., Jaradat, S.A., Lim, M.K., Kargul, G.J., Wang, X., Grahovac, M.J., Pantano, S., Sano, Y., Piao, Y., Nagaraja, R., Doi, H., Wood, W.H., Becker, K.G., and Ko, M.S. (2000) Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Proc. Natl. Acad. Sci. 97, 9127-9132.
  • Young, R.A. (2000) Biomedical discovery with DNA arrays. Cell 102, 9-15.

1998