CPIRT Publications

• Incorporating Incubation Period Distributions to Precisely Estimate the Association Between Rainfall and Legionella Infection.Cassell K, Warren JL, Heneghan C, Weinberger DM. J Infect Dis. 2025 Jul 11. PMID: 39689015.
• Complete genome sequence of a novel Acinetobacter spp. linked to an outbreak of sepsis following apheresis platelet transfusion.Kent AG, Sula E, Breaker E, McAllister GA, Gable P, Chan-Riley MY, Leung VH, Peaper DR, Jones SA, Jones JM, Basavaraju S, Halpin AL. Microbiol Resour Announc. 2025 Jul 10; 2025 Jun 12. PMID: 40503797.
• High-affinity CD16A polymorphism associated with reduced risk ofsevere COVID-19.Qualls AE, Tsao T, Lui I, Lim SA, Su Y, Chen E, Duchen D, Maecker HT, Kim-Schulze S, Montgomery RR, Krammer F, Langelier CR, Levy O, Baden LR, Melamed E, Ehrlich LI, McComsey GA, Sekaly RP, Cairns CB, Haddad EK, Shaw AC, Hafler DA, Corry DB, Kheradmand F, Atkinson MA, Brakenridge SC, Higuita NIA, Metcalf JP, Hough CL, Messer WB, Pulendran B, Nadeau KC, Davis MM, Fernandez-Sesma A, Simon V, Kraft M, Bime C, Calfee CS, Erle DJ, Schaenmann J, Ozonoff A, Peters B, Kleinstein SH, Augustine AD, Diray-Arce J, Becker PM, Rouphael N, Goldman JD, Calabrese DR, Heath JR, Wells JA, Reed EF, Lanier LL, Pickering H, Aguilar OA. JCI Insight. 2025 Jul 8; 2025 May 22. PMID: 40402577.
• MICBG406A polymorphism reduces risk of mechanical ventilation and death during viral acute lung injury.Pickering H, Alipanah-Lechner N, Chen E, Duchen D, Maecker HT, Kim-Schulze S, Montgomery RR, Cotsapas C, Steen H, Krammer F, Langelier CR, Levy O, Baden LR, Melamed E, Ehrlich LI, McComsey GA, Sekaly RP, Cairns CB, Haddad EK, Shaw AC, Hafler DA, Corry DB, Kheradmand F, Atkinson MA, Brakenridge SC, Agudelo Higuita NI, Metcalf JP, Hough CL, Messer WB, Pulendran B, Nadeau KC, Davis MM, Fernandez-Sesma A, Simon V, Kraft M, Bime C, Erle DJ, Schaenman J, Ozonoff A, Peters B, Kleinstein SH, Augustine AD, Diray-Arce J, Becker PM, Rouphael N, Altman MC, Bosinger SE, Eckalbar WL, Network I, Calfee CS, Aguilar OA, Reed EF, Greenland JR, Calabrese DR. JCI Insight. 2025 Jul 3; 2025 Jul 3. PMID: 40608426.
• How COVID-19 Treatment in Pregnancy Reflects Healthcare Utilization During a Pandemic: A Two-Stage Individual Participant Data Meta-Analysis Combining Case-Based Registries.Maisonneuve E, De Bruin O, Favre G, Oakley E, Kim JYH, Farooq F, Al-Fadel N, Almutairi A, Del Mar Gil M, Fernandez Buhigas I, Visentin S, Cosmi E, Surita F, Souza RT, Cecatti JG, Costa ML, Sanin-Blair J, Tolosa JE, Hadar E, Goncé A, Poncelet C, Forestier F, Quibel T, Martinez de Tejada B, Eggel-Hort B, Capoccia Brugger R, Surbek D, Raio L, Radan AP, Todesco-Bernasconi M, Monod C, Schäffer L, Harnadi A, Mousavi SH, Ayres-de-Campos D, Pomar L, Sichitiu J, Salomon LJ, Ville Y, Papadia A, Rossier MC, Schuler-Faccini L, Goncalves Pereira N, Etchegaray A, Nieto-Calvache AJ, Geary M, Fuenzalida J, Grawe C, Ko AI, Johann S, De Santis M, Voekt CA, Hcini N, Nielsen-Saines K, Garabedian C, Sentilhes L, May Feuerschuette OH, Vetter G, Wardhana MP, Dajti I, Bloemenkamp KWM, Siiskonen SJ, Smith ER, Baud D, Panchaud A, Sturkenboom MCJM. Pharmacoepidemiol Drug Saf. 2025 Jul. PMID: 40665803.
• Nasal biomarker testing to rule out viral respiratory infection and triage samples: a test performance study.Amat JAR, Dudgeon SN, Cheemarla NR, Watkins TA, Green AB, Young HP, Peaper DR, Landry ML, Schulz WL, Foxman EF. EBioMedicine. 2025 Jul; 2025 Jun 20. PMID: 40543450.
• Zika virus: advancing a priority research agenda for preparedness and response.Lackritz EM, Ng LC, Marques ETA, Rabe IB, Bourne N, Staples JE, Méndez-Rico JA, Harris E, Brault AC, Ko AI, Beasley DWC, Leighton T, Wilder-Smith A, Ostrowsky JT, Mehr AJ, Ulrich AK, Velayudhan R, Golding JP, Fay PC, Cehovin A, Moua NM, Moore KA, Osterholm MT, Barrett ADT. Lancet Infect Dis. 2025 Jul; 2025 Feb 27. PMID: 40024263.
• Bioluminescent imaging to investigate Coxiella burnetii pathogenesis identifies adipose tissue as a host niche for infection.Andrews JM, Roy CR. Infect Immun. 2025 Jun 30; 2025 Jun 30. PMID: 40586810.
• Gender differences in Leptospira exposure risk, perceptions of disease severity, and high-risk behaviours in Salvador, Brazil: A cross-sectional study.Delight EA, Santiago DCC, Palma FAG, de Oliveira D, Souza FN, Santana JO, Hidano A, López YA, Reis MG, Ko AI, Marphatia AA, Cremonese C, Costa F, Eyre MT. PLOS Glob Public Health. 2025; 2025 Jun 27. PMID: 40577380.
• Utilizing virus genomic surveillance to predict vaccine effectiveness.Kwon J, Li K, Warren JL, Pandya S, Hahn AM, Pitzer VE, Weinberger DM, Grubaugh ND. medRxiv. 2025 Jun 22; 2025 Jun 22. PMID: 40585094.
• Prevalence and Phenotype of Food Allergy in Children with Cystic Fibrosis.Nguyen HP, Shabanova V, McCollum S, Polk B, Lee T, Whittington K, Cunha P, Bruscia EM, Egan ME, Emmenegger M, Leeds S. Ann Allergy Asthma Immunol. 2025 Jun 21; 2025 Jun 21. PMID: 40550267.
• Neuroimmune pathophysiology of long COVID.Moen JK, Baker CA, Iwasaki A. Psychiatry Clin Neurosci. 2025 Jun 19; 2025 Jun 19. PMID: 40536011.
• Systemic in utero gene editing as a treatment for cystic fibrosis.Ricciardi AS, Barone C, Putman R, Quijano E, Gupta A, Nguyen R, Mandl H, Piotrowski-Daspit AS, Lopez-Giraldez F, Luks V, Freedman-Weiss MR, Farrelly J, Ahle S, Lynn AY, Glazer PM, Saltzman WM, Stitelman DH, Egan ME. Proc Natl Acad Sci U S A. 2025 Jun 17; 2025 Jun 10. PMID: 40493185.
• Enhancing nucleic acid delivery by the integration of artificial intelligence into lipid nanoparticle formulation.Amoako K, Mokhammad A, Malik A, Yesudasan S, Wheba A, Olagunju O, Gu SX, Yarovinsky T, Faustino EVS, Nguyen J, Hwa J. Front Med Technol. 2025; 2025 Jun 16. PMID: 40589473.
• Advisory Committee on Immunization Practices at a Crossroads.Asturias EJ, Brewer NT, Brooks O, Chen LH, Chu HY, Cineas S, Loehr J, Jamieson DJ, Kamboj M, Kuchel GA, Lyons K, Maldonado YA, Moser CA, Schechter R, Shaw AC, Talbot K, Zucker JR. JAMA. 2025 Jun 16; 2025 Jun 16. PMID: 40522971.
• Host-pathogen interaction profiling of nontypeable Haemophilus influenzae and Moraxella catarrhalis coinfection of bronchial epithelial cells.D'Mello A, Murphy TF, Wade M, Kirkham C, Kong Y, Tettelin H, Pettigrew MM. mSphere. 2025 Jun 10; 2025 Jun 10. PMID: 40492732.
• Microfluidics combined with electron microscopy for rapid and high-throughput mapping of antibody-viral glycoprotein complexes.Sewall LM, de Paiva Froes Rocha R, Gibson G, Louie M, Xie Z, Bangaru S, Tran AS, Ozorowski G, Mohanty S, Beutler N, Rogers TF, Burton DR, Shaw AC, Batista FD, Chocarro Ruiz B, Torrents de la Peña A, Ward AB. Nat Biomed Eng. 2025 Jun 3; 2025 Jun 3. PMID: 40461656.
• Mucosal unadjuvanted booster vaccines elicit local IgA responses by conversion of pre-existing immunity in mice.Kwon DI, Mao T, Israelow B, Santos Guedes de Sá K, Dong H, Iwasaki A. Nat Immunol. 2025 Jun; 2025 May 13. PMID: 40360777.
• Damage sensing through TLR9 regulates inflammatory and antiviral responses during influenza infection.Kim J, Yuan Y, Agaronyan K, Zhao A, Wang VD, Gau D, Toosi N, Gupta G, Essayas H, Kaminski A, McGovern J, Yu S, Woo S, Lee CJ, Gandhi S, Saber T, Saleh T, Hu B, Sun Y, Ishikawa G, Bain W, Evankovich J, Chen L, Yun H, Herzog EL, Dela Cruz CS, Ryu C, Sharma L. Mucosal Immunol. 2025 Jun; 2025 Jan 28. PMID: 39884393.
• Internal Tremors and Vibrations in Long COVID: A Cross-Sectional Study.Zhou T, Sawano M, Arun AS, Caraballo C, Michelsen T, McAlpine LS, Bhattacharjee B, Lu Y, Khera R, Huang C, Warner F, Herrin J, Iwasaki A, Krumholz HM. Am J Med. 2025 Jun; 2024 Jul 26. PMID: 39069199.
• Hormetic elevation of taurine restrains inflammaging by deactivating the NLRP3 inflammasome.Guan C, Ryu S, Dong M, Youm YH, Mohanty S, Maeda R, Orliaguet L, Kim HH, Dlugos T, Smith SR, Ravussin E, Onyuru J, Wang A, Shaw AC, Hoffman HM, Kluger Y, Sugiura Y, Dixit VD. bioRxiv. 2025 May 31; 2025 May 31. PMID: 40501605.
• Cutaneous Lupus Features Specialized Stromal Niches and Altered Retroelement Expression.Gehlhausen JR, Kong Y, Baker E, Ramachandran S, Koumpouras F, Ko CJ, Vesely M, Little AJ, Damsky W, King B, Iwasaki A. J Invest Dermatol. 2025 May 21; 2025 May 21. PMID: 40409678.
• Temporal changes in pneumococcal carriage among childcare-attending children during the COVID-19 pandemic in the Greater New Haven Area, USA.Peno C, Thindwa D, Hislop MS, Yolda-Carr D, Egbewole D, Viswanathan G, Lin TY, Mbodj S, Rayack E, Askari HM, Kazemi Y, Lapidus S, Spatz ES, Zirinsky E, Oliveira CR, Bei AK, Weinberger DM, Wyllie AL. medRxiv. 2025 May 16; 2025 May 16. PMID: 40463565.
• Cerebrospinal fluid immune phenotyping reveals distinct immunotypes of myalgic encephalomyelitis/chronic fatigue syndrome.Bastos VC, Greene KA, Tabachnikova A, Bhattacharjee B, Sjögren P, Bertilson B, Reifert J, Zhang M, Kamath K, Shon J, Gehlhausen JR, Guan L, VanElzakker M, Proal A, Bragée B, Iwasaki A. J Immunol. 2025 May 15; 2025 May 15. PMID: 40373264.
• Impact of COVID-19 vaccination on symptoms and immune phenotypes in vaccine-naïve individuals with Long COVID.Grady CB, Bhattacharjee B, Silva J, Jaycox J, Lee LW, Silva Monteiro V, Sawano M, Massey D, Caraballo C, Gehlhausen JR, Tabachnikova A, Mao T, Lucas C, Peña-Hernandez MA, Xu L, Tzeng TJ, Takahashi T, Herrin J, Güthe DB, Akrami A, Assaf G, Davis H, Harris K, McCorkell L, Schulz WL, Griffin D, Wei H, Ring AM, Guan L, Dela Cruz C, Krumholz HM, Iwasaki A. Commun Med (Lond). 2025 May 9; 2025 May 9. PMID: 40346201.
• Inhibition of MIF with an Allosteric Inhibitor Triggers Cell Cycle Arrest in Acute Myeloid Leukemia.Pantouris G, Khurana L, Tilstam P, Benner A, Cho TY, Lelaidier M, Perrée M, Rosenbaum Z, Leng L, Foss F, Bhandari V, Verma A, Bucala R, Lolis EJ. ACS Omega. 2025 May 6; 2025 Apr 22. PMID: 40352549.
• Personalized inhaled bacteriophage therapy for treatment of multidrug-resistant Pseudomonas aeruginosa in cystic fibrosis.Chan BK, Stanley GL, Kortright KE, Vill AC, Modak M, Ott IM, Sun Y, Würstle S, Grun CN, Kazmierczak BI, Rajagopalan G, Harris ZM, Britto CJ, Stewart J, Talwalkar JS, Appell CR, Chaudary N, Jagpal SK, Jain R, Kanu A, Quon BS, Reynolds JM, Teneback CC, Mai QA, Shabanova V, Turner PE, Koff JL. Nat Med. 2025 May; 2025 Apr 29. PMID: 40301561.
• MIF as an oncogenic driver of low-heterogeneity melanomas.Tran TT, Sánchez-Zuno GA, Kulkarni RP, Kluger HM, Bucala R. Mol Oncol. 2025 May; 2025 Mar 25. PMID: 40131169.
• Targeting the SARS-CoV-2 reservoir in long COVID.Proal AD, Aleman S, Bomsel M, Brodin P, Buggert M, Cherry S, Chertow DS, Davies HE, Dupont CL, Deeks SG, Ely EW, Fasano A, Freire M, Geng LN, Griffin DE, Henrich TJ, Hewitt SM, Iwasaki A, Krumholz HM, Locci M, Marconi VC, Mehandru S, Muller-Trutwin M, Painter MM, Pretorius E, Price DA, Putrino D, Qian Y, Roan NR, Salmon D, Tan GS, VanElzakker MB, Wherry EJ, Van Weyenbergh J, Yonker LM, Peluso MJ. Lancet Infect Dis. 2025 May; 2025 Feb 10. PMID: 39947217.
• The PAX LC Trial: A Decentralized, Phase 2, Randomized, Double-Blind Study of Nirmatrelvir/Ritonavir Compared with Placebo/Ritonavir for Long COVID.Krumholz HM, Sawano M, Bhattacharjee B, Caraballo C, Khera R, Li SX, Herrin J, Coppi A, Holub J, Henriquez Y, Johnson MA, Goddard TB, Rocco E, Hummel AC, Al Mouslmani M, Putrino DF, Carr KD, Carvajal-Gonzalez S, Charnas L, De Jesus M, Ziegler FW 3rd, Iwasaki A. Am J Med. 2025 May; 2024 May 10. PMID: 38735354.
• Exploring RSV transmission patterns in different age groups in the United States.Li K, Pitzer VE, Weinberger DM. J Infect Dis. 2025 Apr 30; 2025 Apr 30. PMID: 40308004.
• Proceedings of the second annual dengue endgame summit: A call to action.Hardy CSC, Bahr LE, Rothman AL, Anderson KB, Barba-Spaeth G, Weiskopf D, Ooi EE, Marques ETA, Bonsignori M, Barrett ADT, Kirkpatrick BD, Castanha PMS, Hamins-Puertolas M, Christofferson RC, Dimopoulos G, Oliveira F, Chiang LW, Ko AI, Gunale B, Kulkarni P, Perkins TA, Dorigatti I, Stewart T, Shaw J, Johansson MA, Thomas SJ, Waickman AT. PLoS Negl Trop Dis. 2025 Apr; 2025 Apr 28. PMID: 40294026.
• Proceedings of the Clinical Microbiology Open 2024: artificial intelligence applications in clinical microbiology.Dien Bard J, Prinzi AM, Larkin PM, Peaper DR, Rhoads DD. J Clin Microbiol. 2025 Apr 9; 2025 Mar 27. PMID: 40145748.
• Identification of a Coxiella burnetii outer membrane porin required for intracellular replication.Yang Z, Duncan-Lowey JK, Roy CR. Infect Immun. 2025 Apr 8; 2025 Mar 12. PMID: 40071978.
• Nirmatrelvir-ritonavir versus placebo-ritonavir in individuals with long COVID in the USA (PAX LC): a double-blind, randomised, placebo-controlled, phase 2, decentralised trial.Sawano M, Bhattacharjee B, Caraballo C, Khera R, Li SX, Herrin J, Christian D, Coppi A, Warner F, Holub J, Henriquez Y, Johnson MA, Goddard TB, Rocco E, Hummel AC, Mouslmani MA, Hooper WB, Putrino DF, Carr KD, Charnas L, De Jesus M, Nepert D, Abreu P, Ziegler FW 3rd, Spertus JA, Iwasaki A, Krumholz HM. Lancet Infect Dis. 2025 Apr 3; 2025 Apr 3. PMID: 40188838.
• Distribution and transmission of M. tuberculosis in a high-HIV prevalence city in Malawi: A genomic and spatial analysis.Chitwood MH, Corbett EL, Ndhlovu V, Sobkowiak B, Colijn C, Andrews JR, Burke RM, Cudahy PGT, Dodd PJ, Imai-Eaton JW, Engelthaler DM, Folkerts M, Feasey HRA, Lan Y, Lewis J, McNichol J, Menzies NA, Chipungu G, Nliwasa M, Weinberger DM, Warren JL, Salomon JA, MacPherson P, Cohen T. PLOS Glob Public Health. 2025; 2025 Apr 2. PMID: 40173177.
• The Role of Viral Interference in Shaping RSV Epidemics Following the 2009 H1N1 Influenza Pandemic.Li K, Thindwa D, Weinberger DM, Pitzer VE. Influenza Other Respir Viruses. 2025 Apr. PMID: 40275825.
• Long COVID Characteristics and Experience: A Descriptive Study From the Yale LISTEN Research Cohort.Sawano M, Wu Y, Shah RM, Zhou T, Arun AS, Khosla P, Kaleem S, Vashist A, Bhattacharjee B, Ding Q, Lu Y, Caraballo C, Warner F, Huang C, Herrin J, Putrino D, Michelsen T, Fisher L, Adinig C, Iwasaki A, Krumholz HM. Am J Med. 2025 Apr; 2024 Apr 24. PMID: 38663793.
• Prospective comparison of the digestive tract resistome and microbiota in cattle raised in grass-fed versus grain-fed production systems.Kwon J, Tanner W, Kong Y, Wade M, Bitler C, Chiavegato MB, Pettigrew MM. mSphere. 2025 Mar 25; 2025 Feb 14. PMID: 39950811.
• Two Mosquito Salivary Antigens Demonstrate Promise as Biomarkers of Recent Exposure to Plasmodium falciparum-Infected Mosquito Bites.Lapidus S, Goheen MM, Sy M, Deme AB, Ndiaye IM, Diedhiou Y, Mbaye AM, Hagadorn KA, Sene SD, Pouye MN, Thiam LG, Ba A, Guerra N, Mbengue A, Raduwan H, Gagnon J, Vigan-Womas I, Parikh S, Ko AI, Ndiaye D, Fikrig E, Chuang YM, Bei AK. J Infect Dis. 2025 Mar 17. PMID: 39475423.
• Relating in vivo RSV infection kinetics to host infectiousness in different age groups.Li K, Bont LJ, Weinberger DM, Pitzer VE. J Infect Dis. 2025 Mar 14; 2025 Mar 14. PMID: 40085821.
• CCR2+ monocytes are dispensable to resolve acute pulmonary Pseudomonas aeruginosa infections in WT and cystic fibrosis mice.Öz HH, Braga CL, Gudneppanavar R, Di Pietro C, Huang PH, Zhang PX, Krause DS, Egan ME, Murray TS, Bruscia EM. J Leukoc Biol. 2025 Mar 14. PMID: 39365279.
• Comparison of oviposition and adult trapping to monitor wMel introgression for Wolbachia-based vector control.Nelson E, Pereira TN, de Castro Ribeiro EM, E Silva BDM, Camillo C, da Costa TR, Teixeira MM, Ko AI, Cummings DAT, Moreira LA. bioRxiv. 2025 Mar 13; 2025 Mar 13. PMID: 40161648.
• A mixed-methods study assessing the performance of a clinical decision support tool for Clostridioides difficile testing for patients receiving laxatives.Peaper DR, Rathod SN, Sussman LS, Azar MM, Murdzek C, Roberts SC, Tichy EM, Topal JE, Kashyap N, McManus D, Martinello RA. Infect Control Hosp Epidemiol. 2025 Mar 13; 2025 Mar 13. PMID: 40079209.
• An atypical atherogenic chemokine that promotes advanced atherosclerosis and hepatic lipogenesis.El Bounkari O, Zan C, Yang B, Ebert S, Wagner J, Bugar E, Kramer N, Bourilhon P, Kontos C, Zarwel M, Sinitski D, Milic J, Jansen Y, Kempf WE, Sachs N, Maegdefessel L, Ji H, Gokce O, Riols F, Haid M, Gerra S, Hoffmann A, Brandhofer M, Avdic M, Bucala R, Megens RTA, Willemsen N, Messerer D, Schulz C, Bartelt A, Harm T, Rath D, Döring Y, Gawaz M, Weber C, Kapurniotu A, Bernhagen J. Nat Commun. 2025 Mar 7; 2025 Mar 7. PMID: 40055309.
• Decline of community-acquired alveolar pneumonia positive for respiratory syncytial virus in hospitalized children following implementation of PCV in Israel.Dagan R, van der Beek BA, Grupel T, Greenberg D, Keren-Naus A, Ben-Shimol S, Weinberger DM. Clin Infect Dis. 2025 Mar 7; 2025 Mar 7. PMID: 40052957.
• Global estimates of rotavirus vaccine efficacy and effectiveness: a rapid review and meta-regression analysis.Prunas O, Asare EO, Sajewski E, Li Y, Pithawala Z, Weinberger DM, Warren JL, Armah GE, Cunliffe NA, Iturriza-Gómara M, Lopman BA, Pitzer VE. EClinicalMedicine. 2025 Mar; 2025 Mar 4. PMID: 40115174.
• Estimated Effectiveness of Nirsevimab Against Respiratory Syncytial Virus.Xu H, Aparicio C, Wats A, Araujo BL, Pitzer VE, Warren JL, Shapiro ED, Niccolai LM, Weinberger DM, Oliveira CR. JAMA Netw Open. 2025 Mar 3; 2025 Mar 3. PMID: 40063022.
• Distinctive Macrophage Migration Inhibitory Factor Receptor Patterns and Soluble Biomarkers in Rheumatoid Arthritis: Unveiling Key Associations with Disease Activity.Sánchez-Zuno GA, Bucala R, Hernández-Bello J, Palafox-Sánchez CA, Vizcaíno-Quirarte AM, Muñoz-Valle JF. J Interferon Cytokine Res. 2025 Mar; 2025 Feb 6. PMID: 39914814.
• Estimating the serotype-specific association between the concentration of vaccine-induced serum antibodies and protection against pneumococcal colonization.Wong A, Warren JL, Fitch L, Perniciaro S, Dagan R, Weinberger DM. J Infect Dis. 2025 Feb 28; 2025 Feb 28. PMID: 40036886.
• Nongenetic adaptation by collective migration.Vo L, Avgidis F, Mattingly HH, Edmonds K, Burger I, Balasubramanian R, Shimizu TS, Kazmierczak BI, Emonet T. Proc Natl Acad Sci U S A. 2025 Feb 25; 2025 Feb 19. PMID: 39970001.
• The role of viral interference in shaping RSV epidemics following the 2009 H1N1 influenza pandemic.Li K, Thindwa D, Weinberger DM, Pitzer VE. medRxiv. 2025 Feb 19; 2025 Feb 19. PMID: 38464193.
• Identification of a multi-omics factor predictive of long COVID in the IMPACC study.Gabernet G, Maciuch J, Gygi JP, Moore JF, Hoch A, Syphurs C, Chu T, Jayavelu ND, Corry DB, Kheradmand F, Baden LR, Sekaly RP, McComsey GA, Haddad EK, Cairns CB, Rouphael N, Fernandez-Sesma A, Simon V, Metcalf JP, Agudelo Higuita NI, Hough CL, Messer WB, Davis MM, Nadeau KC, Pulendran B, Kraft M, Bime C, Reed EF, Schaenman J, Erle DJ, Calfee CS, Atkinson MA, Brackenridge SC, Melamed E, Shaw AC, Hafler DA, Ozonoff A, Bosinger SE, Eckalbar W, Maecker HT, Kim-Schulze S, Steen H, Krammer F, Westendorf K, Peters B, Fourati S, Altman MC, Levy O, Smolen KK, Montgomery RR, Diray-Arce J, Kleinstein SH, Guan L, Ehrlich LIR. bioRxiv. 2025 Feb 14; 2025 Feb 14. PMID: 39990442.
• Advancing adoptability and sustainability of digital prediction tools for climate-sensitive infectious disease prevention and control.Phung D, Colón-González FJ, Weinberger DM, Bui V, Nghiem S, Chu C, Phung H, Sinh Vu N, Doan QV, Hashizume M, Lau CL, Reid S, Phan LT, Tran DN, Pham CT, Do KQ, Dubrow R. Nat Commun. 2025 Feb 14; 2025 Feb 14. PMID: 39952939.
• Machine learning models predict long COVID outcomes based on baseline clinical and immunologic factors.Jayavelu ND, Samaha H, Wimalasena ST, Hoch A, Gygi JP, Gabernet G, Ozonoff A, Liu S, Milliren CE, Levy O, Baden LR, Melamed E, Ehrlich LIR, McComsey GA, Sekaly RP, Cairns CB, Haddad EK, Schaenman J, Shaw AC, Hafler DA, Montgomery RR, Corry DB, Kheradmand F, Atkinson MA, Brakenridge SC, Higuita NIA, Metcalf JP, Hough CL, Messer WB, Pulendran B, Nadeau KC, Davis MM, Geng LN, Sesma AF, Simon V, Krammer F, Kraft M, Bime C, Calfee CS, Erle DJ, Langelier CR, Guan L, Maecker HT, Peters B, Kleinstein SH, Reed EF, Diray-Arce J, Rouphael N, Altman MC. medRxiv. 2025 Feb 13; 2025 Feb 13. PMID: 39990570.
• Setdb1 Loss Induces Type I Interferons and Immune Clearance of Melanoma.McGeary MK, Damsky W, Daniels AJ, Lang SM, Xu Q, Song E, Huet-Calderwood C, Lou HJ, Paradkar S, Micevic G, Kaech SM, Calderwood DA, Turk BE, Yan Q, Iwasaki A, Bosenberg MW. Cancer Immunol Res. 2025 Feb 3. PMID: 39589394.
• The Complex Landscape of Updated Pneumococcal Conjugate Vaccines.Thindwa D, Shapiro ED, Weinberger DM. Open Forum Infect Dis. 2025 Feb; 2025 Jan 28. PMID: 39968305.
• Detection of Pneumococcal Carriage in Asymptomatic Healthcare Workers.Waghela P, Davis R, Campbell M, Datta R, Hislop MS, Vega NJ, Wurst L, Yolda-Carr D, Couch L, Hernandez M, Grant LR, Alexander-Parrish R, Arguedas A, Gessner BD, Martinello RA, Weinberger DM, Wyllie AL. Open Forum Infect Dis. 2025 Feb; 2025 Jan 15. PMID: 39917332.
• Decreased T helper 1 cell function underlies recurrent sinopulmonary infections in the 17q12 deletion syndrome.Shin JJ, Shin HJ, Gutierrez A, Yoo N, Par-Young J, Osmani L, Shin MS, Sanchez-Lara PA, Bucala R, Soffer G, Kang I. EBioMedicine. 2025 Feb; 2025 Feb 1. PMID: 39891996.
• Platelet-Monocyte Aggregate Instigates Inflammation and Vasculopathy in Kawasaki Disease.Zhang Y, Jia C, Guo M, Chen Q, Wen Y, Wang T, Xie Y, Fan X, Gao J, Yarovinsky TO, Liu R, Jiang Z, Wang M, Zhou J, Che D, Fu L, Edelson R, Gu X, Hwa J, Tang WH. Adv Sci (Weinh). 2025 Feb; 2024 Dec 12. PMID: 39665236.
• Social mixing patterns of United States healthcare personnel at a quaternary health center: a prospective observational study.Pischel L, Aguolu OG, Ahmed N, Campbell MM, Borg R, Duckwall C, Willebrand K, Zaleski A, Paintsil EE, Muenker MC, Malik AA, Kiti MC, Warren JL, Jenness SM, Lopman BA, Belsky J, Martinello RA, Yildirim I, Ko AI, Omer SB. Infect Control Hosp Epidemiol. 2025 Jan 30; 2025 Jan 30. PMID: 39880795.
• Leptospirosis, melioidosis, and rickettsioses in the vicious circle of neglect.Tshokey T, Ko AI, Currie BJ, Munoz-Zanzi C, Goarant C, Paris DH, Dance DAB, Limmathurotsakul D, Birnie E, Bertherat E, Gongal G, Benschop J, Savelkoel J, Stenos J, Saraswati K, Robinson MT, Day NPJ, Graves SR, Belmain SR, Blacksell SD, Wiersinga WJ. PLoS Negl Trop Dis. 2025 Jan; 2025 Jan 23. PMID: 39847571.
• CFTR dictates monocyte adhesion by facilitating integrin clustering but not activation.Younis DA, Marosvari M, Liu W, Pulikkot S, Cao Z, Zhou B, Vella AT, McArdle S, Hu L, Chen Y, Gan W, Yu J, Bruscia EM, Fan Z. Proc Natl Acad Sci U S A. 2025 Jan 21; 2025 Jan 15. PMID: 39813254.
• Estimating the burden of RSV- and influenza-associated hospitalizations, ICU admissions, and deaths across age and socioeconomic groups in New York State, 2005-2019.Xu H, Pitzer VE, Warren JL, Shapiro ED, Weinberger DM. medRxiv. 2025 Jan 12; 2025 Jan 12. PMID: 39830274.
• Streptococcus pneumoniae Serotype Distribution Among US Adults Hospitalized With Community-Acquired Pneumonia, 2019-2020.Ramirez JA, Hubler RA, Ali M, Gray SL, Carrico R, McNaughton CD, Wunderink RG, Dela Cruz CS, Chilson EL, Cané AD, Isturiz RE, Pride MW, Jodar L, Gessner BD, Grant LR. Open Forum Infect Dis. 2025 Jan; 2024 Dec 17. PMID: 39758745.
• Next generation triplex-forming PNAs for site-specific genome editing of the F508del CFTR mutation.Gupta A, Barone C, Quijano E, Piotrowski-Daspit AS, Perera JD, Riccardi A, Jamali H, Turchick A, Zao W, Saltzman WM, Glazer PM, Egan ME. J Cyst Fibros. 2025 Jan; 2024 Aug 5. PMID: 39107154.
• Exploring RSV transmission patterns in different age groups in the United States.Li K, Pitzer VE, Weinberger DM. medRxiv. 2024 Dec 26; 2024 Dec 26. PMID: 39763530.
• Tiled Amplicon Sequencing Enables Culture-free Whole-Genome Sequencing of Pathogenic Bacteria From Clinical Specimens.Kalinich CC, Gonzalez FL, Osmaston A, Breban MI, Distefano I, Leon C, Sheen P, Zimic M, Coronel J, Tan G, Crudu V, Ciobanu N, Codreanu A, Solano W, Ráez J, Allicock OM, Chaguza C, Wyllie AL, Brandt M, Weinberger DM, Sobkowiak B, Cohen T, Grandjean L, Grubaugh ND, Redmond SN. bioRxiv. 2024 Dec 20; 2024 Dec 20. PMID: 39763738.
• CRISPR-Cas9-based approaches for genetic analysis and epistatic interaction studies in Coxiella burnetii.Steiner S, Roy CR. mSphere. 2024 Dec 19; 2024 Nov 19. PMID: 39560384.
• Postacute Sequelae of COVID-19 in Pediatric Patients Within the United States: A Scoping Review.Miller CM, Borre C, Green A, Funaro M, Oliveira CR, Iwasaki A. Am J Med Open. 2024 Dec; 2024 Sep 26. PMID: 39639960.
• SARS-CoV-2 reprograms murine alveolar macrophages to dampen flu.Tabachnikova A, Iwasaki A. Trends Immunol. 2024 Dec; 2024 Nov 22. PMID: 39580310.
• Prior knowledge-guided vision-transformer-based unsupervised domain adaptation for intubation prediction in lung disease at one week.Yang J, Henao JAG, Dvornek N, He J, Bower DV, Depotter A, Bajercius H, de Mortanges AP, You C, Gange C, Ledda RE, Silva M, Dela Cruz CS, Hautz W, Bonel HM, Reyes M, Staib LH, Poellinger A, Duncan JS. Comput Med Imaging Graph. 2024 Dec; 2024 Oct 15. PMID: 39515190.
• Ezrin drives adaptation of monocytes to the inflamed lung microenvironment.Gudneppanavar R, Di Pietro C, H Öz H, Zhang PX, Cheng EC, Huang PH, Tebaldi T, Biancon G, Halene S, Hoppe AD, Kim C, Gonzalez AL, Krause DS, Egan ME, Gupta N, Murray TS, Bruscia EM. Cell Death Dis. 2024 Nov 29; 2024 Nov 29. PMID: 39613751.
• CD74 promotes the formation of an immunosuppressive tumor microenvironment in triple-negative breast cancer in mice by inducing the expansion of tolerogenic dendritic cells and regulatory B cells.Pellegrino B, David K, Rabani S, Lampert B, Tran T, Doherty E, Piecychna M, Meza-Romero R, Leng L, Hershkovitz D, Vandenbark AA, Bucala R, Becker-Herman S, Shachar I. PLoS Biol. 2024 Nov; 2024 Nov 22. PMID: 39576827.
• Cotranslational molecular condensation of cochaperones and assembly factors facilitates axonemal dynein biogenesis.Li Y, Xu W, Cheng Y, Djenoune L, Zhuang C, Cox AL, Britto CJ, Yuan S, Wang S, Sun Z. Proc Natl Acad Sci U S A. 2024 Nov 19; 2024 Nov 14. PMID: 39541357.
• Chronic Viral Reactivation and Associated Host Immune Response and Clinical Outcomes in Acute COVID-19 and Post-Acute Sequelae of COVID-19.Maguire C, Chen J, Rouphael N, Pickering H, Phan HV, Glascock A, Chu V, Dandekar R, Corry D, Kheradmand F, Baden LR, Selaky R, McComsey GA, Haddad EK, Cairns CB, Pulendran B, Fernandez-Sesma A, Simon V, Metcalf JP, Higuita NIA, Messer WB, David MM, Nadeau KC, Kraft M, Bime C, Schaenman J, Erle D, Calfee CS, Atkinson MA, Brackenridge SC, Ehrlich LIR, Montgomery RR, Shaw AC, Hough CL, Geng LN, Hafler DA, Augustine AD, Becker PM, Peters B, Ozonoff A, Kim-Schulze SH, Krammer F, Bosinger S, Eckalbar W, Altman MC, Wilson M, Guan L, Kleinstein SH, Smolen KK, Reed EF, Levy O, Maecker H, Hunt P, Steen H, Diray-Arce J, Langelier CR, Melamed E. bioRxiv. 2024 Nov 16; 2024 Nov 16. PMID: 39605478.
• Relating in vivo RSV infection kinetics to host infectiousness in different age groups.Li K, Bont LJ, Weinberger DM, Pitzer VE. medRxiv. 2024 Nov 15; 2024 Nov 15. PMID: 39606407.
• Until it's done for everyone: the role of CFTR modulator label expansion.Britto CJ, Taylor-Cousar JL. Eur Respir J. 2024 Nov; 2024 Nov 14. PMID: 39542511.
• Plasma collagen neoepitopes are associated with multiorgan disease in the ACCESS and GRADS sarcoidosis cohorts.Sand JMB, Jessen H, Leeming DJ, Yu S, Lee CJ, Hu B, Sun Y, Adams T, Pivarnik T, Liu A, Woo S, McGovern JR, Fiorini V, Saber T, Higuero-Sevilla JP, Gulati M, Kaminski N, Damsky W, Shaw AC, Mohanty S, Goobie G, Zhang Y, Herzog EL, Ryu C. Thorax. 2024 Nov 14; 2024 Nov 14. PMID: 39117421.
• Does 23-Valent Pneumococcal Polysaccharide Vaccination Decrease All-Cause Mortality?Rezahosseini O, Eiberg MF, Weinberger DM, Harboe ZB. Open Forum Infect Dis. 2024 Nov; 2024 Nov 13. PMID: 39582506.
• Sex differences in postacute infection syndromes.Silva J, Iwasaki A. Sci Transl Med. 2024 Nov 13; 2024 Nov 13. PMID: 39536120.
• Persistent bloodstream infection in children: examining the role for repeat blood cultures.Puthawala CM, Feinn RS, Rivera-Viñas J, Lee H, Murray TS, Peaper DR. J Clin Microbiol. 2024 Nov 13; 2024 Oct 4. PMID: 39365070.
• InSeq analysis of defined Legionella pneumophila libraries identifies a transporter-encoding gene cluster important for intracellular replication in mammalian hosts.Moss CE, Roy CR. mBio. 2024 Nov 13; 2024 Oct 4. PMID: 39365064.
• A B cell screen against endogenous retroviruses identifies glycan-reactive IgM that recognizes a broad array of enveloped viruses.Yang Y, Treger RS, Hernandez-Bird J, Lu P, Mao T, Iwasaki A. Sci Immunol. 2024 Nov 8; 2024 Nov 8. PMID: 39514636.
• Particle size distribution of viable nebulized bacteriophage for the treatment of multi-drug resistant Pseudomonas aeruginosa.Thompson DL, Semersky Z, Feinn R, Huang P, Turner PE, Chan BK, Koff JL, Murray TS. Respir Med Res. 2024 Nov; 2024 Jul 25. PMID: 39121591.
• The protein disulfide isomerase A3 and osteopontin axis promotes influenza-induced lung remodelling.Kumar A, Mark ZF, Carbajal MP, DeLima DS, Chamberlain N, Walzer J, Ruban M, Chandrasekaran R, Daphtary N, Aliyeva M, Poynter ME, Janssen-Heininger YMW, Bates JH, Alcorn JF, Britto CJ, Dela Cruz CS, Jegga AG, Anathy V. Br J Pharmacol. 2024 Nov; 2024 Aug 8. PMID: 39118388.
• Interactions between respiratory syncytial virus and Streptococcus pneumoniae in the pathogenesis of childhood respiratory infections: a systematic review.Besteman SB, Bogaert D, Bont L, Mejias A, Ramilo O, Weinberger DM, Dagan R. Lancet Respir Med. 2024 Nov; 2024 Jul 8. PMID: 38991585.
• Estimated Population-Level Impact of Pneumococcal Conjugate Vaccines Against All-Cause Pneumonia Mortality Among Unvaccinated in 5 Latin American Countries.Prunas O, Shioda K, Toscano CM, Bastias M, Valenzuela-Bravo MT, Tito JD, Warren JL, Weinberger DM, de Oliveira LH. J Infect Dis. 2024 Oct 16. PMID: 38502711.
• Contact with young children is a major risk factor for pneumococcal colonization in older adults.Wyllie AL, Yolda-Carr D, Hislop MS, Mbodj S, Wurst L, Waghela P, Alexander-Parrish R, Grant LR, Arguedas A, Gessner BD, Weinberger DM. FEMS Microbes. 2024; 2024 Oct 14. PMID: 39502507.
• Thyroid Cancer Incidence During 2020 to 2021 COVID-19 Variant Waves.Bell R, Weinberger DM, Venkatesh M, Fernandes-Taylor S, Francis DO, Davies L. JAMA Otolaryngol Head Neck Surg. 2024 Oct 10; 2024 Oct 10. PMID: 39388144.
• Context-specific anti-inflammatory roles of type III interferon signaling in the lung in nonviral injuries.Feng J, Kim J, Wang VD, Chang D, Liu H, Bain WG, Robinson KM, Jie Z, Kotenko SV, Dela Cruz CS, Sharma L. Physiol Rep. 2024 Oct. PMID: 39455422.
• Estimated Deaths Averted in Adults by COVID-19 Vaccination in Select Latin American and Caribbean Countries.Savinkina A, Weinberger DM, Toscano CM, De Oliveira LH. Open Forum Infect Dis. 2024 Oct; 2024 Sep 10. PMID: 39411224.
• Eosinophilia Is a Favorable Marker for Pneumonia in Chronic Obstructive Pulmonary Disease.Gu KM, Jung JW, Kang MJ, Kim DK, Choi H, Cho YJ, Jang SH, Lee CH, Oh YM, Park JS, Kim JY. Tuberc Respir Dis (Seoul). 2024 Oct; 2024 May 3. PMID: 38710525.
• Disentangling the influence of reservoir abundance and pathogen shedding on zoonotic spillover of the Leptospira agent in urban informal settlements.Soni N, Eyre MT, Souza FN, Diggle PJ, Ko AI, Begon M, Pickup R, Childs JE, Khalil H, Carvalho-Pereira TSA, Pertile AC, Carvalho M, de Oliveira D, Nery N Jr, Giorgi E, Costa F. Front Public Health. 2024; 2024 Sep 18. PMID: 39360250.
• Genome-wide association study between SARS-CoV-2 single nucleotide polymorphisms and virus copies during infections.Li K, Chaguza C, Stamp J, Chew YT, Chen NFG, Ferguson D, Pandya S, Kerantzas N, Schulz W, Hahn AM, Ogbunugafor CB, Pitzer VE, Crawford L, Weinberger DM, Grubaugh ND. PLoS Comput Biol. 2024 Sep; 2024 Sep 17. PMID: 39288189.
• Real-World Effectiveness of Nirsevimab Against Respiratory Syncytial Virus: A Test-Negative Case-Control Study.Xu H, Aparicio C, Wats A, Araujo BL, Pitzer VE, Warren JL, Shapiro ED, Niccolai LM, Weinberger DM, Oliveira CR. medRxiv. 2024 Sep 12; 2024 Sep 12. PMID: 39314944.
• Hematological and biochemical profiles, infection and habitat quality in an urban rat population.Carvalho-Pereira T, Pedra GG, de Oliveira DS, Souza FN, Zeppelini CG, Santos LRN, Couto RD, Bahiense TC, da Silva EM, Begon M, Reis MG, Ko AI, Childs JE, Costa F. Res Sq. 2024 Sep 11; 2024 Sep 11. PMID: 39315279.
• A low-cost culture- and DNA extraction-free method for the molecular detection of pneumococcal carriage in saliva.Peno C, Lin T-Y, Hislop MS, Yolda-Carr D, Farjado K, York A, Pitzer VE, Weinberger DM, Bei AK, Allicock OM, Wyllie AL. Microbiol Spectr. 2024 Sep 3; 2024 Jul 19. PMID: 39028185.
• High burden of viruses and bacterial pathobionts drives heightened nasal innate immunity in children.Watkins TA, Green AB, Amat JAR, Cheemarla NR, Hänsel K, Lozano R, Dudgeon SN, Germain G, Landry ML, Schulz WL, Foxman EF. J Exp Med. 2024 Sep 2; 2024 Jul 1. PMID: 38949638.
• Pseudo-outbreak of Parengyodontium album related to contaminated saline used in specimen processing in the microbiology laboratory.Havill NL, Colandrea NA, Merwede J, Aniskiewicz MJ, Roberts SC, Patel K, Martinello RA, Peaper DR. Am J Infect Control. 2024 Sep; 2024 May 31. PMID: 38825239.