2023
Spatially-targeted tuberculosis screening has limited impact beyond household contact tracing in Lima, Peru: A model-based analysis
Havumaki J, Warren J, Zelner J, Menzies N, Calderon R, Contreras C, Lecca L, Becerra M, Murray M, Cohen T. Spatially-targeted tuberculosis screening has limited impact beyond household contact tracing in Lima, Peru: A model-based analysis. PLOS ONE 2023, 18: e0293519. PMID: 37903091, PMCID: PMC10615320, DOI: 10.1371/journal.pone.0293519.Peer-Reviewed Original Research
2017
A Likelihood Approach for Real-Time Calibration of Stochastic Compartmental Epidemic Models
Zimmer C, Yaesoubi R, Cohen T. A Likelihood Approach for Real-Time Calibration of Stochastic Compartmental Epidemic Models. PLOS Computational Biology 2017, 13: e1005257. PMID: 28095403, PMCID: PMC5240920, DOI: 10.1371/journal.pcbi.1005257.Peer-Reviewed Original ResearchConceptsParameter estimationStochastic modelLinear noise approximationStochastic transmission-dynamic modelEnsemble Kalman filter methodReal-time parameter estimationKey epidemic parametersParticle filtering methodInfectious individualsStochastic systemsCompartmental epidemic modelLikelihood approximationMultiple shootingNoise approximationBenchmark methodsEpidemic modelPoisson observationsKalman filter methodUnobserved numberAccurate estimatesEpidemic parametersLikelihood approachFiltering methodDynamic modelApproximation
2015
The potential impact of coinfection on antimicrobial chemotherapy and drug resistance
Birger RB, Kouyos RD, Cohen T, Griffiths EC, Huijben S, Mina MJ, Volkova V, Grenfell B, Metcalf CJE. The potential impact of coinfection on antimicrobial chemotherapy and drug resistance. Trends In Microbiology 2015, 23: 537-544. PMID: 26028590, PMCID: PMC4835347, DOI: 10.1016/j.tim.2015.05.002.Peer-Reviewed Original Research
2013
Data needs for evidence-based decisions: a tuberculosis modeler's ‘wish list’ [Review article]
Dowdy DW, Dye C, Cohen T. Data needs for evidence-based decisions: a tuberculosis modeler's ‘wish list’ [Review article]. The International Journal Of Tuberculosis And Lung Disease 2013, 17: 866-877. PMID: 23743307, PMCID: PMC4041555, DOI: 10.5588/ijtld.12.0573.Peer-Reviewed Original Research