2012
SPLOOCE
Kroll J, Galante P, Ohara D, Navarro F, Ohno-Machado L, de Souza S. SPLOOCE. RNA Biology 2012, 9: 1339-1343. PMID: 23064119, PMCID: PMC3597574, DOI: 10.4161/rna.22182.Peer-Reviewed Original ResearchSetting Up an Intronic miRNA Database
Hinske L, Heyn J, Galante P, Ohno-Machado L, Kreth S. Setting Up an Intronic miRNA Database. Methods In Molecular Biology 2012, 936: 69-76. PMID: 23007499, DOI: 10.1007/978-1-62703-083-0_5.Peer-Reviewed Original ResearchConceptsAvailable information resourcesWeb-based toolInformation resourcesGenome-wide analysisHost gene transcriptionAnalysis techniquesIntergenic miRNAsIntragenic microRNAsWide analysisUseful analysis techniqueHost genesMiRNA databaseGene transcriptionMiRNA dataDifferent analysis techniquesMiRNAsSignificant attentionTranscriptionDatabaseMore informationRecent pastBasic structureTechniqueUnique linkageGenes
2011
A Primer on the Current State of Microarray Technologies
Trachtenberg A, Robert J, Abdalla A, Fraser A, He S, Lacy J, Rivas-Morello C, Truong A, Hardiman G, Ohno-Machado L, Liu F, Hovig E, Kuo W. A Primer on the Current State of Microarray Technologies. Methods In Molecular Biology 2011, 802: 3-17. PMID: 22130870, DOI: 10.1007/978-1-61779-400-1_1.Peer-Reviewed Reviews, Practice Guidelines, Standards, and Consensus StatementsMeSH KeywordsDatabases, Nucleic AcidDNA PrimersEquipment DesignFluorescent DyesGene Expression ProfilingHumansOligonucleotide Array Sequence AnalysisConceptsMicroarray technologyGenome-wide gene expression studiesAvailability of microarraysVariety of genesThousands of genesDNA microarray technologyDisease-specific genesGene expression studiesGene discoveryMolecular functioningExpression studiesGene expressionMolecular geneticsGenesComputer science analysisMicroarrayComplicated networkDisease statesDrug developmentNormal functioningMassive levelsDisease diagnosisGeneticsField of microarraysHigh levels
2002
Analysis of matched mRNA measurements from two different microarray technologies
Kuo W, Jenssen T, Butte A, Ohno-Machado L, Kohane I. Analysis of matched mRNA measurements from two different microarray technologies. Bioinformatics 2002, 18: 405-412. PMID: 11934739, DOI: 10.1093/bioinformatics/18.3.405.Peer-Reviewed Original Research