2022
IMI-CDE: an interactive interface for collaborative mapping of study variables to common data elements
Tao S, Chou W, Li J, Du J, Ram P, Abeysinghe R, Xu H, Jiang X, Rose P, Ohno-Machado L, Zhang G. IMI-CDE: an interactive interface for collaborative mapping of study variables to common data elements. 2022, 00: 465-468. DOI: 10.1109/ichi54592.2022.00070.Peer-Reviewed Original Research
2020
The Data Tags Suite (DATS) model for discovering data access and use requirements
Alter G, Gonzalez-Beltran A, Ohno-Machado L, Rocca-Serra P. The Data Tags Suite (DATS) model for discovering data access and use requirements. GigaScience 2020, 9: giz165. PMID: 32031623, PMCID: PMC7006671, DOI: 10.1093/gigascience/giz165.Peer-Reviewed Original ResearchConceptsData accessData discovery toolsPrivacy of subjectsData use agreementsConfidential dataMetadata itemsData reuseMetadata schemaAutomated systemDiscovery toolTechnical systemsStandard wayUse agreementsAccessPrivacyMetadataSchemaUse requirementsReuseResearchersResearch dataSystemRequirementsInformationData
2004
A primer on gene expression and microarrays for machine learning researchers
Kuo W, Kim E, Trimarchi J, Jenssen T, Vinterbo S, Ohno-Machado L. A primer on gene expression and microarrays for machine learning researchers. Journal Of Biomedical Informatics 2004, 37: 293-303. PMID: 15465482, DOI: 10.1016/j.jbi.2004.07.002.Peer-Reviewed Reviews, Practice Guidelines, Standards, and Consensus StatementsConceptsNew algorithmSupervised learning modelUCI machineLearning modelMicroarray data analysisAlgorithmic developmentsTypes of dataMachineData setsMain challengesGene expression dataMain motivationAlgorithmData analysisBiomedical experimentsLarge numberExpression dataMicroarray dataResearchersRepositoryWebMicroarray experimentsNew waveDataSet