2014
MAGI: a Node.js web service for fast microRNA-Seq analysis in a GPU infrastructure
Kim J, Levy E, Ferbrache A, Stepanowsky P, Farcas C, Wang S, Brunner S, Bath T, Wu Y, Ohno-Machado L. MAGI: a Node.js web service for fast microRNA-Seq analysis in a GPU infrastructure. Bioinformatics 2014, 30: 2826-2827. PMID: 24907367, PMCID: PMC4173015, DOI: 10.1093/bioinformatics/btu377.Peer-Reviewed Original ResearchConceptsWeb servicesWeb reportsLarge input filesNovel feature extractionEnd performance improvementsExploration of resultsGPU infrastructureInteractive visualizationJavaScript frameworkParallel computingGPU devicesHypertext PreprocessorCUDA CFeature extractionDrop operationInput filesPlot generationSalient featuresPerformance improvementInfrastructureNodesServicesData analysisComputingBrowser
2011
A multi-layered framework for disseminating knowledge for computer-based decision support
Boxwala A, Rocha B, Maviglia S, Kashyap V, Meltzer S, Kim J, Tsurikova R, Wright A, Paterno M, Fairbanks A, Middleton B. A multi-layered framework for disseminating knowledge for computer-based decision support. Journal Of The American Medical Informatics Association 2011, 18: i132-i139. PMID: 22052898, PMCID: PMC3241169, DOI: 10.1136/amiajnl-2011-000334.Peer-Reviewed Original ResearchConceptsCDS systemsComputer-based decision supportPatient data representationKnowledge representation frameworkMulti-layered frameworkData representationDecision support toolStructured knowledgeClinical decision support toolCDS servicesText recommendationDecision supportRepresentation frameworkSupport toolPreliminary evaluationFrameworkDifferent clinical sitesGuideline knowledgeWorkflowSystemImplementationServicesImplementabilityKnowledgeRepresentation