2023
Bacillus subtilis Phages Related to SIOphi from Desert Soils of the Southwest United States
Magness L, Delesalle V, Vill A, Strine M, Chaudhry B, Lichty K, Guffey A, DeCurzio J, Krukonis G. Bacillus subtilis Phages Related to SIOphi from Desert Soils of the Southwest United States. PHAGE 2023, 4: 165-172. PMID: 40134792, PMCID: PMC11932521, DOI: 10.1089/phage.2023.0021.Peer-Reviewed Original ResearchPutative protein coding genesDouble-stranded DNA genomeBacillus subtilis phagePhage host rangeLow GC contentProtein coding genesDiversity of phagesAmino acid similarityPhage clusterPhage evolutionPhage genomeGC contentUnique genesBacillus phagesCoding genesDNA genomeReplication genesModel organismsPhageHost rangeMicrobial dynamicsGenetic differencesGenomeGenesDesert soilsExperimental Evolution of the TolC-Receptor Phage U136B Functionally Identifies a Tail Fiber Protein Involved in Adsorption through Strong Parallel Adaptation
Burmeister A, Tzintzun-Tapia E, Roush C, Mangal I, Barahman R, Bjornson R, Turner P. Experimental Evolution of the TolC-Receptor Phage U136B Functionally Identifies a Tail Fiber Protein Involved in Adsorption through Strong Parallel Adaptation. Applied And Environmental Microbiology 2023, 89: e00079-23. PMID: 37191555, PMCID: PMC10304864, DOI: 10.1128/aem.00079-23.Peer-Reviewed Original ResearchConceptsExperimental evolutionPhage populationsParallel molecular evolutionWhole-population sequencingAntibiotic resistance proteinsTail fiber proteinE. coli hostPhage evolutionEvolutionary potentialMolecular evolutionPhage genotypesTolC proteinParallel adaptationProtein geneAntibiotic resistanceExperimental populationsBacterial diversitySelection pressureBacterial hostsColi hostFiber proteinBacterial populationsBacterial cellsPhage resistancePhage dynamics
2022
Comparative Genomics of Six Lytic Bacillus subtilis Phages from the Southwest United States
Vill A, Delesalle V, Tomko B, Lichty K, Strine M, Guffey A, Burton E, Tanke N, Krukonis G. Comparative Genomics of Six Lytic Bacillus subtilis Phages from the Southwest United States. PHAGE 2022, 3: 171-178. PMID: 36793550, PMCID: PMC9917325, DOI: 10.1089/phage.2022.0030.Peer-Reviewed Original ResearchPutative protein coding genesDouble-stranded DNA genomeLoci encoding proteinsLow GC contentProtein coding genesDiversity of phagesAmino acid similarityPhage evolutionGC contentSmall genesGenomic mosaicismCoding genesDNA genomeEncode proteinsProtein foldingModel organismsPhageMicrobial dynamicsGenomeGenesProteinSiphovirusIndelsGenBankNucleotide
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