2016
P013 Development of the IPD-MHC database
Robinson J, Maccari G, Bontrop R, Ho C, Grimholt U, Kaufman J, Guethlein L, Ballingall K, Marsh S, Hammond J. P013 Development of the IPD-MHC database. Human Immunology 2016, 77: 51. DOI: 10.1016/j.humimm.2016.07.078.Peer-Reviewed Original ResearchIPD-MHC DatabaseNomenclature CommitteeCross-species alignmentPrimer design toolsLocus-specific databasesNomenclature systemIPD-IMGT/HLA DatabaseIPD-MHCNGS dataBioinformatics challengesMHC sequencesSequence variantsCurated databaseIPD-IMGT/HLANon-human speciesFrequent speciesMultiple speciesNomenclatural standardsSpeciesBioinformaticsBiological resourcesSequenceNomenclatureData submissionLociS0117 Development of the ipd-MHC Database
Robinson J, Maccari G, Bontrop R, Ho S, Grimholt U, Kaufman J, Guethlein L, Ballingall K, Marsh S, Hammond J. S0117 Development of the ipd-MHC Database. Journal Of Animal Science 2016, 94: 9-9. DOI: 10.2527/jas2016.94supplement49x.Peer-Reviewed Original ResearchIPD-MHC DatabaseNomenclature CommitteeCross-species alignmentPrimer design toolsLocus-specific databasesNomenclature systemIPD-IMGT/HLA DatabaseIPD-MHCNGS dataBioinformatics challengesMHC sequencesSequence variantsCurated databaseIPD-IMGT/HLANon-human speciesFrequent speciesMultiple speciesNomenclatural standardsSpeciesBioinformaticsBiological resourcesSequenceNomenclatureData submissionPrimers
2014
Mitochondrial Disease Sequence Data Resource (MSeqDR): A global grass-roots consortium to facilitate deposition, curation, annotation, and integrated analysis of genomic data for the mitochondrial disease clinical and research communities
Falk M, Shen L, Gonzalez M, Leipzig J, Lott M, Stassen A, Diroma M, Navarro-Gomez D, Yeske P, Bai R, Boles R, Brilhante V, Ralph D, DaRe J, Shelton R, Terry S, Zhang Z, Copeland W, van Oven M, Prokisch H, Wallace D, Attimonelli M, Krotoski D, Zuchner S, Gai X, participants: M, Bale S, Bedoyan J, Behar D, Bonnen P, Brooks L, Calabrese C, Calvo S, Chinnery P, Christodoulou J, Church D, Clima R, Cohen B, Cotton R, de Coo I, Derbenevoa O, Dunnen J, Dimmock D, Enns G, Gasparre G, Goldstein A, Gonzalez I, Gwinn K, Hahn S, Haas R, Hakonarson H, Hirano M, Kerr D, Li D, Lvova M, Macrae F, Maglott D, McCormick E, Mitchell G, Mootha V, Okazaki Y, Pujol A, Parisi M, Perin J, Pierce E, Procaccio V, Rahman S, Reddi H, Rehm H, Riggs E, Rodenburg R, Rubinstein Y, Saneto R, Santorsola M, Scharfe C, Sheldon C, Shoubridge E, Simone D, Smeets B, Smeitink J, Stanley C, Suomalainen A, Tarnopolsky M, Thiffault I, Thorburn D, Van Hove J, Wolfe L, Wong L. Mitochondrial Disease Sequence Data Resource (MSeqDR): A global grass-roots consortium to facilitate deposition, curation, annotation, and integrated analysis of genomic data for the mitochondrial disease clinical and research communities. Molecular Genetics And Metabolism 2014, 114: 388-396. PMID: 25542617, PMCID: PMC4512182, DOI: 10.1016/j.ymgme.2014.11.016.Peer-Reviewed Original ResearchConceptsWeb portalData resourcesLocus-specific databasesAnnotation tracksData analysis needsResearch communityAnalysis toolsUnique identifier systemsCentral web portalMitochondrial diseaseCustom annotation tracksUser-friendly fashionData analysis toolsGenomic data analysisUser interrogationData of relevanceDataset curationData sharingData visualizationIdentifier systemVariant pathogenicity assessmentCentralized knowledgeAnalysis needsOntology toolsMSeqDR
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