2021
Genetics of substance use disorders: a review
Deak J, Johnson E. Genetics of substance use disorders: a review. Psychological Medicine 2021, 51: 2189-2200. PMID: 33879270, PMCID: PMC8477224, DOI: 10.1017/s0033291721000969.Peer-Reviewed Original ResearchConceptsGenome-wide association studiesGenome-wide variationAlcohol-related traitsLarger GWAS samplesCHRNB4 gene clusterGenetic architectureGene clusterGenetic effortsGWAS findingsGWA findingsRelated traitsGWAS samplesAssociation studiesGenetic relationshipsDownstream analysisGeneticsTraitsGenetic epidemiologyCHRNA5-CHRNA3Genetic etiologyGenetic factorsGenetic influencesPresent reviewRecent advancesGenes
2017
Correction: Investigation of common, low-frequency and rare genome-wide variation in anorexia nervosa
Huckins L, Hatzikotoulas K, Southam L, Thornton L, Steinberg J, Aguilera-McKay F, Treasure J, Schmidt U, Gunasinghe C, Romero A, Curtis C, Rhodes D, Moens J, Kalsi G, Dempster D, Leung R, Keohane A, Burghardt R, Ehrlich S, Hebebrand J, Hinney A, Ludolph A, Walton E, Deloukas P, Hofman A, Palotie A, Palta P, van Rooij F, Stirrups K, Adan R, Boni C, Cone R, Dedoussis G, van Furth E, Gonidakis F, Gorwood P, Hudson J, Kaprio J, Kas M, Keski-Rahonen A, Kiezebrink K, Knudsen G, Maj M, Monteleone A, Monteleone P, Raevuori A, Reichborn-Kjennerud T, Tozzi F, Tsitsika A, van Elburg A, Collier D, Sullivan P, Breen G, Bulik C, Zeggini E. Correction: Investigation of common, low-frequency and rare genome-wide variation in anorexia nervosa. Molecular Psychiatry 2017, 23: 1969-1969. PMID: 30420737, PMCID: PMC7608408, DOI: 10.1038/mp.2017.202.Peer-Reviewed Original ResearchGenome-wide variationInvestigation of common, low-frequency and rare genome-wide variation in anorexia nervosa
Huckins L, Hatzikotoulas K, Southam L, Thornton L, Steinberg J, Aguilera-McKay F, Treasure J, Schmidt U, Gunasinghe C, Romero A, Curtis C, Rhodes D, Moens J, Kalsi G, Dempster D, Leung R, Keohane A, Burghardt R, Ehrlich S, Hebebrand J, Hinney A, Ludolph A, Walton E, Deloukas P, Hofman A, Palotie A, Palta P, van Rooij F, Stirrups K, Adan R, Boni C, Cone R, Dedoussis G, van Furth E, Gonidakis F, Gorwood P, Hudson J, Kaprio J, Kas M, Keski-Rahonen A, Kiezebrink K, Knudsen G, Slof-Op 't Landt M, Maj M, Monteleone A, Monteleone P, Raevuori A, Reichborn-Kjennerud T, Tozzi F, Tsitsika A, van Elburg A, Collier D, Sullivan P, Breen G, Bulik C, Zeggini E. Investigation of common, low-frequency and rare genome-wide variation in anorexia nervosa. Molecular Psychiatry 2017, 23: 1169-1180. PMID: 29155802, PMCID: PMC5828108, DOI: 10.1038/mp.2017.88.Peer-Reviewed Original ResearchConceptsGenome-wide association studiesGenome-wide significanceGenomic search spaceGenome-wide variationLow-frequency variantsDetect low-frequency variantsPopulations of European originDe novo replicationIntergenic variantVariant associationsExome-chipAssociation studiesIntronic variantsRare variantsIn silicoEuropean originVariantsEffect sizeLociOPCMLWell-poweredSilicoReplicationNeuropsychiatric disorders
2016
Multiple Transcript Properties Related to Translation Affect mRNA Degradation Rates in Saccharomyces cerevisiae
Neymotin B, Ettorre V, Gresham D. Multiple Transcript Properties Related to Translation Affect mRNA Degradation Rates in Saccharomyces cerevisiae. G3: Genes, Genomes, Genetics 2016, 6: 3475-3483. PMID: 27633789, PMCID: PMC5100846, DOI: 10.1534/g3.116.032276.Peer-Reviewed Original ResearchMRNA degradation ratesGreen fluorescent proteinGC contentRibosome densityTranscriptional propertiesVariants of green fluorescent proteinThird position of codonsTranscriptome-wide variationGenome-wide variationSaccharomyces cerevisiae</i>Positions of codonsProperties of transcriptionIncreasing GC contentTranslation start siteDecreased ribosome densityRate of mRNA degradationThird positionCoding sequence variantsDegradation of mRNABudding YeastSynonymous sitesCodon usageSaccharomyces cerevisiaeTranscript lengthStart sitePatterns of Genome-Wide Variation in Glossina fuscipes fuscipes Tsetse Flies from Uganda
Gloria-Soria A, Dunn WA, Telleria EL, Evans BR, Okedi L, Echodu R, Warren WC, Montague MJ, Aksoy S, Caccone A. Patterns of Genome-Wide Variation in Glossina fuscipes fuscipes Tsetse Flies from Uganda. G3: Genes, Genomes, Genetics 2016, 6: 1573-1584. PMID: 27172181, PMCID: PMC4889654, DOI: 10.1534/g3.116.027235.Peer-Reviewed Original ResearchMeSH KeywordsAnimalsChromosome MappingDNA, MitochondrialGene-Environment InteractionGenes, InsectGenetic LinkageGenetic VariationGenetics, PopulationGenome, InsectGenome-Wide Association StudyGenomicsGenotypeGeographyHigh-Throughput Nucleotide SequencingLinkage DisequilibriumMicrosatellite RepeatsPolymorphism, Single NucleotideSelection, GeneticTsetse FliesUgandaConceptsSingle nucleotide polymorphismsLinkage disequilibriumExtent of LDLocal environmental adaptationGenome-wide variationDetection of lociOverall linkage disequilibriumInsect vectorsDifferent environmental conditionsWhole-genome sequencingPopulation genomicsStrong selectionAssociation analysisEnvironmental adaptationGenomic patternsPopulation dynamicsSignificant genetic associationUninfected fliesDisease transmissionSequence technologyAssociation studiesEnvironmental conditionsTsetse fliesHuman African trypanosomiasisRelevant phenotypes
2012
European American Stratification in Ovarian Cancer Case Control Data: The Utility of Genome-Wide Data for Inferring Ancestry
Raska P, Iversen E, Chen A, Chen Z, Fridley BL, Permuth-Wey J, Tsai YY, Vierkant RA, Goode EL, Risch H, Schildkraut JM, Sellers TA, Barnholtz-Sloan J. European American Stratification in Ovarian Cancer Case Control Data: The Utility of Genome-Wide Data for Inferring Ancestry. PLOS ONE 2012, 7: e35235. PMID: 22590501, PMCID: PMC3348917, DOI: 10.1371/journal.pone.0035235.Peer-Reviewed Original ResearchConceptsGenome-wide SNP dataGenome-wide variationGenome-wide dataCommon inversion polymorphismAncestry informative marker panelAncestral variationInversion polymorphismPopulation structureChromosome 2SNP dataChromosome 6Chromosome 8AIM panelsCase-control sampleWide dataPopulation stratificationLactase geneEuropean variationMarker panelStudy sitesNorthern Europe
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