2009
Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays
Hazen SP, Naef F, Quisel T, Gendron JM, Chen H, Ecker JR, Borevitz JO, Kay SA. Exploring the transcriptional landscape of plant circadian rhythms using genome tiling arrays. Genome Biology 2009, 10: r17. PMID: 19210792, PMCID: PMC2688271, DOI: 10.1186/gb-2009-10-2-r17.Peer-Reviewed Original ResearchConceptsArabidopsis genomeCircadian clockCircadian clock regulationPlant circadian rhythmsSmall nucleolar RNAsGenome tiling arraysRhythmic expression patternCircadian rhythmClock regulationTranscriptional landscapeTiling arraysIntergenic regionNucleolar RNAsAntisense transcriptsUnbiased interrogationWhole genomeNoncoding regionsExpression patternsGenomeSense strandTranscriptsGenesProteinUnbiased analysisIntrons
2008
Genome-Wide Occupancy of SREBP1 and Its Partners NFY and SP1 Reveals Novel Functional Roles and Combinatorial Regulation of Distinct Classes of Genes
Reed BD, Charos AE, Szekely AM, Weissman SM, Snyder M. Genome-Wide Occupancy of SREBP1 and Its Partners NFY and SP1 Reveals Novel Functional Roles and Combinatorial Regulation of Distinct Classes of Genes. PLOS Genetics 2008, 4: e1000133. PMID: 18654640, PMCID: PMC2478640, DOI: 10.1371/journal.pgen.1000133.Peer-Reviewed Original ResearchConceptsTarget genesGenome-wide occupancyDNA-binding motifComplex transcriptional responseGenome tiling arraysDiverse biological pathwaysSREBP1 target genesCritical transcriptional regulatorNovel functional roleGene expression microarraysDistinct functional pathwaysCombinatorial regulationTarget promotersTranscriptional regulatorsTiling arraysRegulatory circuitryTranscriptional responseChromatin immunoprecipitationFatty acid metabolismExpression microarraysFunctional pathwaysBiological pathwaysHepatocyte cell lineHuman hepatocyte cell lineSp1Genomic analysis of estrogen cascade reveals histone variant H2A.Z associated with breast cancer progression
Hua S, Kallen CB, Dhar R, Baquero MT, Mason CE, Russell BA, Shah PK, Liu J, Khramtsov A, Tretiakova MS, Krausz TN, Olopade OI, Rimm DL, White KP. Genomic analysis of estrogen cascade reveals histone variant H2A.Z associated with breast cancer progression. Molecular Systems Biology 2008, 4: msb200825. PMID: 18414489, PMCID: PMC2394496, DOI: 10.1038/msb.2008.25.Peer-Reviewed Original ResearchConceptsHistone variant H2A.ZVariant H2A.ZBreast cancer progressionTranscription factor-binding sitesTranscriptional regulatory cascadeCancer progressionGenome tiling arraysWhole-genome mappingFactor-binding sitesRegulatory cascadeTiling arraysChromatin immunoprecipitationGenome mappingGenomic analysisH2A.Z levelsRNA interferenceGene targetsGene expressionEpigenetic factorsMicroarray screeningH2A.ZCell proliferationLymph node metastasisBreast cancer survivalHigh expression
2004
Global Identification of Human Transcribed Sequences with Genome Tiling Arrays
Bertone P, Stolc V, Royce TE, Rozowsky JS, Urban AE, Zhu X, Rinn JL, Tongprasit W, Samanta M, Weissman S, Gerstein M, Snyder M. Global Identification of Human Transcribed Sequences with Genome Tiling Arrays. Science 2004, 306: 2242-2246. PMID: 15539566, DOI: 10.1126/science.1103388.Peer-Reviewed Original ResearchMeSH KeywordsAnimalsBase SequenceComputational BiologyConserved SequenceCpG IslandsDatabases, GeneticDNA, ComplementaryDNA, IntergenicExonsGenome, HumanHumansIntronsMiceNucleic Acid HybridizationOligonucleotide Array Sequence AnalysisOligonucleotide ProbesProteinsReproducibility of ResultsReverse Transcriptase Polymerase Chain ReactionRNA, MessengerSequence Homology, Nucleic AcidTranscription, GeneticConceptsTranscribed sequencesGenome tiling arraysComplementary DNA samplesHigh-density oligonucleotideMammalian proteinsTiling arraysIntergenic regionSignificant homologyHuman genomeNonrepetitive sequencesPolyadenylated RNAGenomeAntisense strandGlobal identificationHuman biologyDNA samplesGenesSequenceHuman liver tissueHomologyRNABiologyProteinLarge fractionHybridization
This site is protected by hCaptcha and its Privacy Policy and Terms of Service apply