2024
The genome organization of the Lake Magadi tilapia, Oreochromis Alcolapia grahami, a cichlid extremophile
Bernardi G, Kavembe G, Bergman H, Bucciarelli G, Wood C. The genome organization of the Lake Magadi tilapia, Oreochromis Alcolapia grahami, a cichlid extremophile. Journal Of Great Lakes Research 2024, 50: 102326. DOI: 10.1016/j.jglr.2024.102326.Peer-Reviewed Original ResearchGC-rich isochoresGC-rich regionBase compositionLake Magadi tilapiaGC-poorRepetitive elementsGC-rich genomic regionsGC-poor genomeRepetitive element analysisProtein coding genesGenomes of vertebratesMagadi tilapiaNile tilapiaGenome organizationGenome sequenceGC-richGenomic regionsCoding genesGenomeHot-waterNatural selectionAlcolapia grahamiFish speciesTilapiaCichlids
2015
Targeted single molecule sequencing methodology for ovarian hyperstimulation syndrome
Orkunoglu-Suer F, Harralson A, Frankfurter D, Gindoff P, O’Brien T. Targeted single molecule sequencing methodology for ovarian hyperstimulation syndrome. BMC Genomics 2015, 16: 264. PMID: 25888426, PMCID: PMC4397691, DOI: 10.1186/s12864-015-1451-2.Peer-Reviewed Original ResearchConceptsSingle molecule sequencingSequence assemblyMolecule sequencingDNA sequencesFunctional analysis of variantsReal-time DNA sequencingGenome Analysis ToolkitTargeted capture enrichmentBase-calling accuracyGC-rich regionEmulsion PCRHuman DNA samplesConventional Sanger sequencingNext generation sequencingMultiplex polymerase chain reactionDepth of coveragePolymerase chain reactionAnalysis of variantsLong readsRead lengthSequencing methodologiesFunctional variantsGeneration sequencingSanger sequencingYield amplicons
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