2023
A guide to the BRAIN Initiative Cell Census Network data ecosystem
Hawrylycz M, Martone M, Ascoli G, Bjaalie J, Dong H, Ghosh S, Gillis J, Hertzano R, Haynor D, Hof P, Kim Y, Lein E, Liu Y, Miller J, Mitra P, Mukamel E, Ng L, Osumi-Sutherland D, Peng H, Ray P, Sanchez R, Regev A, Ropelewski A, Scheuermann R, Tan S, Thompson C, Tickle T, Tilgner H, Varghese M, Wester B, White O, Zeng H, Aevermann B, Allemang D, Ament S, Athey T, Baker C, Baker K, Baker P, Bandrowski A, Banerjee S, Bishwakarma P, Carr A, Chen M, Choudhury R, Cool J, Creasy H, D’Orazi F, Degatano K, Dichter B, Ding S, Dolbeare T, Ecker J, Fang R, Fillion-Robin J, Fliss T, Gee J, Gillespie T, Gouwens N, Zhang G, Halchenko Y, Harris N, Herb B, Hintiryan H, Hood G, Horvath S, Huo B, Jarecka D, Jiang S, Khajouei F, Kiernan E, Kir H, Kruse L, Lee C, Lelieveldt B, Li Y, Liu H, Liu L, Markuhar A, Mathews J, Mathews K, Mezias C, Miller M, Mollenkopf T, Mufti S, Mungall C, Orvis J, Puchades M, Qu L, Receveur J, Ren B, Sjoquist N, Staats B, Tward D, van Velthoven C, Wang Q, Xie F, Xu H, Yao Z, Yun Z, Zhang Y, Zheng W, Zingg B. A guide to the BRAIN Initiative Cell Census Network data ecosystem. PLOS Biology 2023, 21: e3002133. PMID: 37390046, PMCID: PMC10313015, DOI: 10.1371/journal.pbio.3002133.Peer-Reviewed Original Research
2012
Novel insights through the integration of structural and functional genomics data with protein networks
Clarke D, Bhardwaj N, Gerstein MB. Novel insights through the integration of structural and functional genomics data with protein networks. Journal Of Structural Biology 2012, 179: 320-326. PMID: 22343087, PMCID: PMC4830681, DOI: 10.1016/j.jsb.2012.02.001.Peer-Reviewed Original ResearchConceptsWide protein-protein interaction networkProtein-protein interaction networkFunctional genomics dataProtein-protein interactionsMacromolecular structural dataCellular processesBiological organizationInteraction networksProtein networkGenomic dataSystems biologyProtein structureConstituent proteinsEvolutionary featuresMacromolecular structure determinationNovel insightsSilico predictionPredictive frameworkGraph modelStructural dataRespective functionsBiological featuresStructure determinationIntrinsic differencesStatic nodes
2007
The road to modularity
Wagner GP, Pavlicev M, Cheverud JM. The road to modularity. Nature Reviews Genetics 2007, 8: 921-931. PMID: 18007649, DOI: 10.1038/nrg2267.Peer-Reviewed Original ResearchConceptsProtein-protein interaction networkMolecular systems biologyPatterns of evolutionGene duplicationGene regulationEvolutionary biologyNeutral mutationsBiological organizationQuantitative traitsInteraction networksSystems biologyStructure of macromoleculesEnvironmental conditionsBiologyDuplicationTraitsMutationsRegulationSelectionModularityMacromolecules
1978
Molecular Biology of Aging
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