2025
Bacterial recolonization of hospital sink biofilms
Healy H, Pawluk E, Dieter L, Roberts S, Tanner W, Mathew T, Peaper D, Martinello R, Peccia J. Bacterial recolonization of hospital sink biofilms. Journal Of Hospital Infection 2025, 162: 95-105. PMID: 40466811, DOI: 10.1016/j.jhin.2025.05.013.Peer-Reviewed Original ResearchBacterial abundanceRRNA gene amplicon sequencingHospital sink drainsGene amplicon sequencingBacterial gene copiesPathogen abundanceAmplicon sequencingMethylobacterium-MethylorubrumDrain biofilmsHealthcare-Associated InfectionsCommunity taxonomyGene copiesMicrobial communitiesSkin microbiomeCulturable bacteriaRecolonizationSink drainsBacterial recolonizationMALDI-TOFCulturable countsBacteriaHospital sinksAbundanceSphingobiumDigital droplet PCRAlterations in Gut Microbiome-Host Relationships After Immune Perturbation in Patients With Multiple Sclerosis
Gupta V, Janda G, Pump H, Lele N, Cruz I, Cohen I, Ruff W, Hafler D, Sung J, Longbrake E. Alterations in Gut Microbiome-Host Relationships After Immune Perturbation in Patients With Multiple Sclerosis. Neurology Neuroimmunology & Neuroinflammation 2025, 12: e200355. PMID: 39819054, PMCID: PMC11741292, DOI: 10.1212/nxi.0000000000200355.Peer-Reviewed Original ResearchConceptsAmplicon sequence variantsIgA-coatedGut microbiomeBacterial fractionRRNA gene amplicon sequencingLong-read sequencingGut microbial symbiontsGene amplicon sequencingMultiple sclerosisStool samplesProportion of bacteriaB cellsHost-microbial interfaceAnti-CD20 monoclonal antibody treatmentDiagnosing MSMicrobial symbiontsIgA-secreting B cellsTaxonomic resolutionSequence variantsAmplicon sequencingB-cell depletionFecal microbiotaMonths of treatmentMonoclonal antibody treatmentDevelopment of autoimmunity
2021
Full-length 16S rRNA gene amplicon analysis of human gut microbiota using MinION™ nanopore sequencing confers species-level resolution
Matsuo Y, Komiya S, Yasumizu Y, Yasuoka Y, Mizushima K, Takagi T, Kryukov K, Fukuda A, Morimoto Y, Naito Y, Okada H, Bono H, Nakagawa S, Hirota K. Full-length 16S rRNA gene amplicon analysis of human gut microbiota using MinION™ nanopore sequencing confers species-level resolution. BMC Microbiology 2021, 21: 35. PMID: 33499799, PMCID: PMC7836573, DOI: 10.1186/s12866-021-02094-5.Peer-Reviewed Original ResearchConceptsRRNA gene amplicon sequencingShort-read sequencingHuman gut microbiotaGene amplicon sequencingAmplicon sequencingRibosomal RNAGut microbiotaTaxonomic classificationBacterial communitiesBacterial compositionFull-length 16S rRNA geneShort-read sequencing methodsConventional short-read sequencing methodsDominant bacterial generaMock bacterial communityLong-read sequencingTaxonomic classification of bacteriaComplex bacterial communitiesRRNA gene analysisClassification of bacteriaComplex bacterial compositionHuman fecal samplesRRNA geneNanopore sequencingMicrobiome studies
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