2023
Predicting tumor recurrence on baseline MR imaging in patients with early-stage hepatocellular carcinoma using deep machine learning
Kucukkaya A, Zeevi T, Chai N, Raju R, Haider S, Elbanan M, Petukhova-Greenstein A, Lin M, Onofrey J, Nowak M, Cooper K, Thomas E, Santana J, Gebauer B, Mulligan D, Staib L, Batra R, Chapiro J. Predicting tumor recurrence on baseline MR imaging in patients with early-stage hepatocellular carcinoma using deep machine learning. Scientific Reports 2023, 13: 7579. PMID: 37165035, PMCID: PMC10172370, DOI: 10.1038/s41598-023-34439-7.Peer-Reviewed Original Research
2022
Dual-Branch Squeeze-Fusion-Excitation Module for Cross-Modality Registration of Cardiac SPECT and CT
Chen X, Zhou B, Xie H, Guo X, Zhang J, Sinusas A, Onofrey J, Liu C. Dual-Branch Squeeze-Fusion-Excitation Module for Cross-Modality Registration of Cardiac SPECT and CT. Lecture Notes In Computer Science 2022, 13436: 46-55. DOI: 10.1007/978-3-031-16446-0_5.Peer-Reviewed Original ResearchConvolutional neural networkCross-modality registrationFeature fusionPrevious convolutional neural networkEarly feature fusionCross-modality informationMultiple convolutional layersMedical image registrationLow registration errorCardiac SPECTConvolutional layersCNN moduleImage featuresLate fusionSource codeNeural networkExcitation moduleInput modalitiesImage registrationSpatial featuresMultiple modalitiesRegistration errorPrevious methodsRigid registrationNetwork
2020
Deep learning-based attenuation map generation for myocardial perfusion SPECT
Shi L, Onofrey JA, Liu H, Liu YH, Liu C. Deep learning-based attenuation map generation for myocardial perfusion SPECT. European Journal Of Nuclear Medicine And Molecular Imaging 2020, 47: 2383-2395. PMID: 32219492, DOI: 10.1007/s00259-020-04746-6.Peer-Reviewed Original Research
2018
Deep Learning Retinal Vessel Segmentation from a Single Annotated Example: An Application of Cyclic Generative Adversarial Neural Networks
Sadda P, Onofrey J, Papademetris X. Deep Learning Retinal Vessel Segmentation from a Single Annotated Example: An Application of Cyclic Generative Adversarial Neural Networks. Lecture Notes In Computer Science 2018, 11043: 82-91. DOI: 10.1007/978-3-030-01364-6_10.Peer-Reviewed Original ResearchGenerative adversarial neural networksAdversarial neural networkGround truth segmentationNeural networkTruth segmentationMedical image segmentation tasksImage segmentation tasksConvolutional neural networkDeep learning methodsRetinal vessel segmentationConvolutional networkSegmentation taskTraining examplesAnnotated examplesTraining dataLearning methodsVessel segmentationSegmentationSynthetic examplesNetworkLarge amountDatasetTaskExampleAccuracy