2024
Associations of alcohol and tobacco use with psychotic, depressive and developmental disorders revealed via multimodal neuroimaging
Qiu L, Liang C, Kochunov P, Hutchison K, Sui J, Jiang R, Zhi D, Vergara V, Yang X, Zhang D, Fu Z, Bustillo J, Qi S, Calhoun V. Associations of alcohol and tobacco use with psychotic, depressive and developmental disorders revealed via multimodal neuroimaging. Translational Psychiatry 2024, 14: 326. PMID: 39112461, PMCID: PMC11306356, DOI: 10.1038/s41398-024-03035-2.Peer-Reviewed Original ResearchConceptsFronto-limbic networkSalience networkAssociated with cognitionFronto-basal gangliaDevelopmental disordersBrain networksLimbic systemAlcohol useAssociated with alcohol useMultimodal brain networksTobacco useAssociation of alcoholPsychiatric disordersMultimodal neuroimagingDMNBrain featuresCognitionAlcohol/tobacco useDisordersAssociated with tobacco useDepressionSymptomsFunctional abnormalitiesAlcoholBrainA confounder controlled machine learning approach: Group analysis and classification of schizophrenia and Alzheimer’s disease using resting-state functional network connectivity
Hassanzadeh R, Abrol A, Pearlson G, Turner J, Calhoun V. A confounder controlled machine learning approach: Group analysis and classification of schizophrenia and Alzheimer’s disease using resting-state functional network connectivity. PLOS ONE 2024, 19: e0293053. PMID: 38768123, PMCID: PMC11104643, DOI: 10.1371/journal.pone.0293053.Peer-Reviewed Original ResearchConceptsResting-state functional network connectivityFunctional network connectivityResting-state functional magnetic resonance imagingFunctional magnetic resonance imagingAlzheimer's diseaseClassification of schizophreniaNetwork pairsPatients to healthy controlsSchizophrenia patientsNeurobiological mechanismsSZ patientsSubcortical networksCerebellum networkSchizophreniaRs-fMRIDisorder developmentMotor networkCompare patient groupsSubcortical domainSZ disorderHealthy controlsMagnetic resonance imagingDisordersNetwork connectivityFunctional abnormalitiesCortical similarities in psychiatric and mood disorders identified in federated VBM analysis via COINSTAC
Rootes-Murdy K, Panta S, Kelly R, Romero J, Quidé Y, Cairns M, Loughland C, Carr V, Catts S, Jablensky A, Green M, Henskens F, Kiltschewskij D, Michie P, Mowry B, Pantelis C, Rasser P, Reay W, Schall U, Scott R, Watkeys O, Roberts G, Mitchell P, Fullerton J, Overs B, Kikuchi M, Hashimoto R, Matsumoto J, Fukunaga M, Sachdev P, Brodaty H, Wen W, Jiang J, Fani N, Ely T, Lorio A, Stevens J, Ressler K, Jovanovic T, van Rooij S, Federmann L, Jockwitz C, Teumer A, Forstner A, Caspers S, Cichon S, Plis S, Sarwate A, Calhoun V. Cortical similarities in psychiatric and mood disorders identified in federated VBM analysis via COINSTAC. Patterns 2024, 5: 100987. PMID: 39081570, PMCID: PMC11284501, DOI: 10.1016/j.patter.2024.100987.Peer-Reviewed Original ResearchPsychiatric disordersStructural neuroimaging studiesPattern of gray matterAutism spectrum disorderGray matterDepressive disorderMood disordersNeuroimaging studiesNeuroanatomical basisSubcortical regionsGM alterationsSpectrum disorderVBM analysisMental illnessGM patternsDisordersCollaborative InformaticsSchizophreniaMoodNeuroimaging Suite ToolkitAutismNeuroimagingVulnerabilityLarge-scale dataDeficitsThe overlap across psychotic disorders: A functional network connectivity analysis
Dini H, Bruni L, Ramsøy T, Calhoun V, Sendi M. The overlap across psychotic disorders: A functional network connectivity analysis. International Journal Of Psychophysiology 2024, 201: 112354. PMID: 38670348, PMCID: PMC11163820, DOI: 10.1016/j.ijpsycho.2024.112354.Peer-Reviewed Original ResearchConceptsFunctional network connectivitySchizoaffective disorderPsychotic disordersHealthy controlsBipolar-Schizophrenia NetworkFunctional network connectivity analysisStatic functional network connectivityResting-state fMRINetwork connectivity analysisPatterns of activityPsychiatric disordersDisorder groupSchizophreniaConnectivity analysisHC groupBipolarConnectivity patternsDisordersPatient groupSymptom scoresGroup of patientsPANSSSchizoaffectiveFMRINetwork connectivitySearching Reproducible Brain Features using NeuroMark: Templates for Different Age Populations and Imaging Modalities
Fu Z, Batta I, Wu L, Abrol A, Agcaoglu O, Salman M, Du Y, Iraji A, Shultz S, Sui J, Calhoun V. Searching Reproducible Brain Features using NeuroMark: Templates for Different Age Populations and Imaging Modalities. NeuroImage 2024, 292: 120617. PMID: 38636639, PMCID: PMC11416721, DOI: 10.1016/j.neuroimage.2024.120617.Peer-Reviewed Original ResearchConceptsFunctional MRIStructural MRIResting-state scanSpatial similarity analysisMental health researchBrain markersDiffusion MRIAge differencesBrain featuresNeuromarkersBrain disordersYoung adult cohortBrain developmentWell-replicatedHuman brainBrainDiffusion MRI dataData-driven analysisDisordersSimilarity analysisAge cohortsGeneralizabilityPopulation-based researchAdult cohortAge-specific adaptationMore reliable biomarkers and more accurate prediction for mental disorders using a label-noise filtering-based dimensional prediction method
Xing Y, van Erp T, Pearlson G, Kochunov P, Calhoun V, Du Y. More reliable biomarkers and more accurate prediction for mental disorders using a label-noise filtering-based dimensional prediction method. IScience 2024, 27: 109319. PMID: 38482500, PMCID: PMC10933544, DOI: 10.1016/j.isci.2024.109319.Peer-Reviewed Original ResearchDiagnosis of mental disordersMental disordersDiagnostic labelsIntegration of neuroimagingSchizophrenia patientsNeuroimaging measuresNeuroimaging perspectiveFMRI dataStable abnormalitiesNeuroimagingDisordersHealthy controlsIndependent subjectsSchizophreniaFMRIDimensional predictionsSubjectsAccurate diagnosisClassification accuracy
2023
Self-supervised multimodal learning for group inferences from MRI data: Discovering disorder-relevant brain regions and multimodal links
Fedorov A, Geenjaar E, Wu L, Sylvain T, DeRamus T, Luck M, Misiura M, Mittapalle G, Hjelm R, Plis S, Calhoun V. Self-supervised multimodal learning for group inferences from MRI data: Discovering disorder-relevant brain regions and multimodal links. NeuroImage 2023, 285: 120485. PMID: 38110045, PMCID: PMC10872501, DOI: 10.1016/j.neuroimage.2023.120485.Peer-Reviewed Original ResearchConceptsBrain regionsMultimodal neuroimaging dataNeuroimaging dataBrain disordersComplex brain disordersMRI dataNeuroimaging researchGroup inferencesDeep InfoMaxSupervised modelsDiagnostic labelsDisordersBrainState-of-the-art unsupervised methodsAlzheimer's phenotypeNovel self-supervised frameworkSelf-supervised frameworkSelf-supervised methodologyCanonical correlation analysisSelf-supervised representationsState-of-the-artDeep learning approachSingle-modal dataMultimode linksComplex brainsPairing explainable deep learning classification with clustering to uncover effects of schizophrenia upon whole brain functional network connectivity dynamics
Ellis C, Miller R, Calhoun V. Pairing explainable deep learning classification with clustering to uncover effects of schizophrenia upon whole brain functional network connectivity dynamics. Neuroimage Reports 2023, 3: 100186. DOI: 10.1016/j.ynirp.2023.100186.Peer-Reviewed Original ResearchEffect of schizophreniaDynamic functional network connectivityBrain network dynamicsNeuropsychiatric disordersBrain activityFunctional magnetic resonance imagingInteractions of brain regionsFunctional network connectivityNetwork dynamicsBrain regionsSchizophreniaClustering algorithmEffect of SZHealthy controlsLearning classificationBrainMagnetic resonance imagingDeep learning modelsDeep learning classificationDisordersNetwork interactionsMachine learning classificationResonance imagingClustersNovel measuresA Brainwide Risk Score for Psychiatric Disorder Evaluated in a Large Adolescent Population Reveals Increased Divergence Among Higher-Risk Groups Relative to Control Participants
Yan W, Pearlson G, Fu Z, Li X, Iraji A, Chen J, Sui J, Volkow N, Calhoun V. A Brainwide Risk Score for Psychiatric Disorder Evaluated in a Large Adolescent Population Reveals Increased Divergence Among Higher-Risk Groups Relative to Control Participants. Biological Psychiatry 2023, 95: 699-708. PMID: 37769983, PMCID: PMC10942727, DOI: 10.1016/j.biopsych.2023.09.017.Peer-Reviewed Original ResearchFunctional network connectivityHealthy control individualsPsychiatric disordersRisk scoreEarly psychosisPsychiatric riskControl individualsStudy participantsHigh-risk groupMajor depressive disorderHigh-risk patternsPsychiatric risk assessmentCognitive Development StudyUnaffected adolescentsAdolescent Brain Cognitive Development (ABCD) studyLarge adolescent populationDepressive disorderHigh riskPsychosis scoresBipolar disorderPotential biomarkersEarly screeningPsychiatric vulnerabilityAdolescent populationDisordersA Deep Learning Approach for Psychosis Spectrum Label Noise Detection from Multimodal Neuroimaging Data
Rokham H, Falakshahi H, Calhoun V. A Deep Learning Approach for Psychosis Spectrum Label Noise Detection from Multimodal Neuroimaging Data. Annual International Conference Of The IEEE Engineering In Medicine And Biology Society (EMBC) 2023, 00: 1-4. PMID: 38082903, DOI: 10.1109/embc40787.2023.10339949.Peer-Reviewed Original ResearchConceptsStructural MRI dataResting-state functional MRI dataFunctional MRI dataFunctional magnetic resonance imaging dataMRI dataMagnetic resonance imaging dataSchizophrenia patientsFunctional connectivity featuresBrain imaging modalitiesMental disordersNeuroimaging dataNeuroimaging techniquesBorderline subjectsHealthy control groupSchizophrenia datasetSchizophreniaConnectivity featuresBrainPsychosisMoodNosologyControl groupDisordersLabel noiseSubjectsMulti-scale convolutional recurrent neural network for psychiatric disorder identification in resting-state EEG
Yan W, Yu L, Liu D, Sui J, Calhoun V, Lin Z. Multi-scale convolutional recurrent neural network for psychiatric disorder identification in resting-state EEG. Frontiers In Psychiatry 2023, 14: 1202049. PMID: 37441141, PMCID: PMC10333510, DOI: 10.3389/fpsyt.2023.1202049.Peer-Reviewed Original ResearchConvolutional recurrent neural networkRecurrent neural networkResting-state EEGNeural networkPsychiatric disordersDeep learning classification modelLow-dimensional subspaceTwo-class classificationDesigning individualized treatmentLearning classification modelsEEG backgroundClassification modelHealthy controlsDepressive disorderSpatiotemporal informationClinical observationsDisease severityAccurate classificationIndividualized treatmentBiomarkersDisorder classificationDisorder identificationDisordersClassificationNeuroimaging biomarkersMulti-study evaluation of neuroimaging-based prediction of medication class in mood disorders
Salman M, Verner E, Bockholt H, Fu Z, Misiura M, Baker B, Osuch E, Sui J, Calhoun V. Multi-study evaluation of neuroimaging-based prediction of medication class in mood disorders. Psychiatry Research Neuroimaging 2023, 333: 111655. PMID: 37201216, PMCID: PMC10330565, DOI: 10.1016/j.pscychresns.2023.111655.Peer-Reviewed Original ResearchConceptsMood stabilizersMood disordersDSM-based diagnosesBipolar disorder patientsDepressive disorderDisorder patientsManic stateResponders to treatmentDepressive stateNeuroimaging dataMoodTreatment responseAntidepressantsDisordersDSMMedication classesComplex symptomsGold standardPatientsMDDSupport vector machineDiagnosisTreatmentComplex casesGeneralizabilityA systematic review of neuroimaging epigenetic research: calling for an increased focus on development
Walton E, Baltramonaityte V, Calhoun V, Heijmans B, Thompson P, Cecil C. A systematic review of neuroimaging epigenetic research: calling for an increased focus on development. Molecular Psychiatry 2023, 28: 2839-2847. PMID: 37185958, PMCID: PMC10615743, DOI: 10.1038/s41380-023-02067-2.Peer-Reviewed Original ResearchConceptsFunctional neuroimaging measuresBrain-based disordersBrain imaging measuresBrain alterationsNeuroimaging measuresBrain outcomesInvestigate environmental influencesBehavioral outcomesDevelopmental periodEnvironmental influencesSample characteristicsDNA methylationSystematically review evidenceBrainTime of lifeDisordersMeasurement of DNA methylationContext of healthImaging measurementsCandidate-gene approachEpigenetic mechanismsEpigenetic researchMeta-analysisDNA methylation markersYears of ageIdentifying Neuropsychiatric Disorder Subtypes and Subtype-Dependent Variation in Diagnostic Deep Learning Classifier Performance
Ellis C, Miller R, Calhoun V. Identifying Neuropsychiatric Disorder Subtypes and Subtype-Dependent Variation in Diagnostic Deep Learning Classifier Performance. 2023, 00: 1-4. DOI: 10.1109/isbi53787.2023.10230384.Peer-Reviewed Original ResearchClinical decision support systemsDynamic functional network connectivityDeep learning classifier’s performanceDisorder subtypesDeep learning classifierDecision support systemClassifier performanceLearning classifiersNetwork connectivityClassifierFunctional network connectivitySupport systemSchizophrenia subtypesStudy disordersPerformanceDisordersSchizophreniaSubtypesNeuropsychiatricSystemNeuroimagingSubtype-dependentCapabilityTopological Characteristics of 5d Spatially Dynamic Brain Networks in Schizophrenia
Salman M, Iraji A, Lewis N, Calhoun V. Topological Characteristics of 5d Spatially Dynamic Brain Networks in Schizophrenia. 2023, 00: 1-5. DOI: 10.1109/isbi53787.2023.10230513.Peer-Reviewed Original ResearchFunctional magnetic resonance imagingSchizophrenia patientsIntrinsic connectivity networksFMRI dataIndependent component analysisResting-state fMRI studiesAnalysis of fMRI dataSpatial independent component analysisHuman brain functionDynamic brain networksFMRI studyBrain networksBrain functionAberrant behaviorBrain disordersBrain statesSchizophreniaConnectivity networksMagnetic resonance imagingMulti-subject fMRI dataData-driven analysisResonance imagingDynamics of controlSpatial activityDisordersAn Adaptive Semi-Supervised Deep Clustering and Its Application to Identifying Biotypes of Psychiatric Disorders
Du Y, Wu F, Niu J, Calhoun V. An Adaptive Semi-Supervised Deep Clustering and Its Application to Identifying Biotypes of Psychiatric Disorders. 2023, 00: 1-4. DOI: 10.1109/isbi53787.2023.10230805.Peer-Reviewed Original ResearchFashion-MNIST dataDeep clustering methodsFunctional magnetic resonance imagingMNIST dataAutism spectrum disorderClustering methodPsychiatric disordersSemi-supervised clusteringPsychiatric disorder symptomsUnlabeled samplesClustering performanceDeep clusteringLabeled samplesDeep learningClustering techniqueDisorder symptomsSpectrum disorderNeuroimaging dataUseful informationSchizophreniaTraditional methodsMagnetic resonance imagingDisordersResonance imagingHigh confidence levelCorrection: Links between electroconvulsive therapy responsive and cognitive impairment multimodal brain networks in late-life major depressive disorder
Qi S, Calhoun V, Zhang D, Miller J, Deng Z, Narr K, Sheline Y, McClintock S, Jiang R, Yang X, Upston J, Jones T, Sui J, Abbott C. Correction: Links between electroconvulsive therapy responsive and cognitive impairment multimodal brain networks in late-life major depressive disorder. BMC Medicine 2023, 21: 113. PMID: 36978111, PMCID: PMC10052797, DOI: 10.1186/s12916-023-02800-2.Peer-Reviewed Original Research