2023
Tutorial: using NEURON for neuromechanical simulations
Fietkiewicz C, McDougal R, Marco D, Chiel H, Thomas P. Tutorial: using NEURON for neuromechanical simulations. Frontiers In Computational Neuroscience 2023, 17: 1143323. PMID: 37583894, PMCID: PMC10424731, DOI: 10.3389/fncom.2023.1143323.Peer-Reviewed Original ResearchUse of pointersCode modularityCode reuseSeparate specificationComplex adaptive behaviorSimulation platformDifferent computational modelsComplicated syntaxClosed-loop modelSimulation toolNeuromechanical modelingNeuron simulationsLevel of complexityComputational modelNeuromechanical simulationsTutorialPointersNon-smooth dynamicsPedagogical modelNeural dynamicsProgramming optionsBody dynamicsModelingAdaptive behaviorFirst step
2019
Open Source Brain: A Collaborative Resource for Visualizing, Analyzing, Simulating, and Developing Standardized Models of Neurons and Circuits
Gleeson P, Cantarelli M, Marin B, Quintana A, Earnshaw M, Sadeh S, Piasini E, Birgiolas J, Cannon RC, Cayco-Gajic NA, Crook S, Davison AP, Dura-Bernal S, Ecker A, Hines ML, Idili G, Lanore F, Larson SD, Lytton WW, Majumdar A, McDougal RA, Sivagnanam S, Solinas S, Stanislovas R, van Albada SJ, van Geit W, Silver RA. Open Source Brain: A Collaborative Resource for Visualizing, Analyzing, Simulating, and Developing Standardized Models of Neurons and Circuits. Neuron 2019, 103: 395-411.e5. PMID: 31201122, PMCID: PMC6693896, DOI: 10.1016/j.neuron.2019.05.019.Peer-Reviewed Original ResearchConceptsData-driven modelsReproducibility of modelsCollaborative interactionsCollaborative resourceExperimental resultsComputational modelAnalyzingReuseStandardized modelModel structureSpecialist knowledgeMultiple scalesComplex biological systemsSharingVisualizingToolInfrastructureNetworkNew modelPlatformPowerful toolSimulatingModelWider communityAdoption