2008
Issues in the Design of a Pilot Concept-Based Query Interface for the Neuroinformatics Information Framework
Marenco L, Li Y, Martone ME, Sternberg PW, Shepherd GM, Miller PL. Issues in the Design of a Pilot Concept-Based Query Interface for the Neuroinformatics Information Framework. Neuroinformatics 2008, 6: 229-239. PMID: 18953674, PMCID: PMC2664632, DOI: 10.1007/s12021-008-9035-9.Peer-Reviewed Original ResearchConceptsNeuroscience Information FrameworkQuery interfaceBiomedical information retrievalInformation frameworkInformation retrievalResource registryDocument archivesBiomedical vocabulariesSingle interfaceStandardized vocabularyCurrent versionDetailed exampleInterfaceResourcesFrameworkOntologyPilot conceptVocabularyRetrievalIssuesCertain lessonsBackground issuesSearchArchivesPrimary resources
2006
Dynamic Tables: An Architecture for Managing Evolving, Heterogeneous Biomedical Data in Relational Database Management Systems
Corwin J, Silberschatz A, Miller PL, Marenco L. Dynamic Tables: An Architecture for Managing Evolving, Heterogeneous Biomedical Data in Relational Database Management Systems. Journal Of The American Medical Informatics Association 2006, 14: 86-93. PMID: 17068350, PMCID: PMC2215074, DOI: 10.1197/jamia.m2189.Peer-Reviewed Original ResearchConceptsBiomedical dataRelational database management systemRelational database technologySemantic data modelDatabase management systemRelational database enginePerformance of queriesHeterogeneous biomedical dataBiomedical informatics researchersDatabase engineDatabase technologyDatabase schemaData sparsityBioinformatics communityData modelInformatics researchersEvolution issuesTypes of dataManagement systemPerformance resultsRelational designClinical informaticsArchitecturePast approachesRelational techniquesAn interdepartmental Ph.D. program in computational biology and bioinformatics: The Yale perspective
Gerstein M, Greenbaum D, Cheung K, Miller PL. An interdepartmental Ph.D. program in computational biology and bioinformatics: The Yale perspective. Journal Of Biomedical Informatics 2006, 40: 73-79. PMID: 16650809, DOI: 10.1016/j.jbi.2006.02.008.Peer-Reviewed Original ResearchComputational BiologyConnecticutCurriculumEducation, GraduateEducation, ProfessionalResearchUniversities
2004
Training the Next Generation of Informaticians: The Impact of “BISTI” and Bioinformatics—A Report from the American College of Medical Informatics
Friedman CP, Altman RB, Kohane IS, McCormick KA, Miller PL, Ozbolt JG, Shortliffe EH, Stormo GD, Szczepaniak MC, Tuck D, Williamson J. Training the Next Generation of Informaticians: The Impact of “BISTI” and Bioinformatics—A Report from the American College of Medical Informatics. Journal Of The American Medical Informatics Association 2004, 11: 167-172. PMID: 14764617, PMCID: PMC400513, DOI: 10.1197/jamia.m1520.Peer-Reviewed Original Research
2001
Maintaining and Incrementally Revalidating a Computer-Based Clinical Guideline: A Case Study
Miller P, Frawley S, Sayward F. Maintaining and Incrementally Revalidating a Computer-Based Clinical Guideline: A Case Study. Journal Of Biomedical Informatics 2001, 34: 99-111. PMID: 11515416, DOI: 10.1006/jbin.2001.1011.Peer-Reviewed Original Research
2000
Opportunities at the Intersection of Bioinformatics and Health Informatics
Miller P. Opportunities at the Intersection of Bioinformatics and Health Informatics. Journal Of The American Medical Informatics Association 2000, 7: 431-438. PMID: 10984461, PMCID: PMC79037, DOI: 10.1136/jamia.2000.0070431.Peer-Reviewed Original ResearchMeSH KeywordsComputational BiologyCooperative BehaviorDecision Support Systems, ClinicalGene ExpressionGenomeMedical InformaticsNeurosciencesConceptsMedical informaticsBioinformatics researchHealth informaticsDecision support issuesField of bioinformaticsData miningRelated question concernsDatabase organizationKnowledge representationInformaticsSet of opportunitiesSet of researchersSupport issuesBioinformaticsPatient recordsSetCase studyMiningInformaticiansCollaborationResearchersIssuesClinical worldTechnologyRepresentationAn integrated web interface for large-scale characterization of sequence data
Cheung K, Kumar A, Snyder M, Miller P. An integrated web interface for large-scale characterization of sequence data. Functional & Integrative Genomics 2000, 1: 70-75. PMID: 11793223, DOI: 10.1007/s101420000004.Peer-Reviewed Original ResearchMeSH KeywordsClinical Laboratory Information SystemsComputational BiologyDatabases, GeneticDatabases, ProteinDNA Transposable ElementsDNA, FungalGene Expression ProfilingGenomeGenome, FungalInternetMutagenesis, InsertionalOpen Reading FramesSaccharomyces cerevisiaeSequence Analysis, DNASequence Homology, Nucleic AcidSoftwareUser-Computer InterfaceConceptsWeb interfaceWeb front endGenomic data processingData filesLarge-scale genome projectsIndependent software programsSet of programsMultiple directoriesData directoryData processingRaw dataTransposon insertion eventsSoftware programFilesFront endDirectoryEfficient protocolLarge amountInterfaceLarge numberGeneral approachUsersSetDownloadNavigation