2008
Issues in the Design of a Pilot Concept-Based Query Interface for the Neuroinformatics Information Framework
Marenco L, Li Y, Martone ME, Sternberg PW, Shepherd GM, Miller PL. Issues in the Design of a Pilot Concept-Based Query Interface for the Neuroinformatics Information Framework. Neuroinformatics 2008, 6: 229-239. PMID: 18953674, PMCID: PMC2664632, DOI: 10.1007/s12021-008-9035-9.Peer-Reviewed Original ResearchMeSH KeywordsAnimalsComputational BiologyDatabases as TopicHumansInformation Storage and RetrievalInternetMeta-Analysis as TopicNeurosciencesPilot ProjectsSoftwareSoftware DesignUser-Computer InterfaceConceptsNeuroscience Information FrameworkQuery interfaceBiomedical information retrievalInformation frameworkInformation retrievalResource registryDocument archivesBiomedical vocabulariesSingle interfaceStandardized vocabularyCurrent versionDetailed exampleInterfaceResourcesFrameworkOntologyPilot conceptVocabularyRetrievalIssuesCertain lessonsBackground issuesSearchArchivesPrimary resources
2006
Dynamic Tables: An Architecture for Managing Evolving, Heterogeneous Biomedical Data in Relational Database Management Systems
Corwin J, Silberschatz A, Miller PL, Marenco L. Dynamic Tables: An Architecture for Managing Evolving, Heterogeneous Biomedical Data in Relational Database Management Systems. Journal Of The American Medical Informatics Association 2006, 14: 86-93. PMID: 17068350, PMCID: PMC2215074, DOI: 10.1197/jamia.m2189.Peer-Reviewed Original ResearchMeSH KeywordsComputational BiologyDatabase Management SystemsDatabases as TopicHumansInformation Storage and RetrievalMedical Records Systems, ComputerizedNeurologySoftwareConceptsBiomedical dataRelational database management systemRelational database technologySemantic data modelDatabase management systemRelational database enginePerformance of queriesHeterogeneous biomedical dataBiomedical informatics researchersDatabase engineDatabase technologyDatabase schemaData sparsityBioinformatics communityData modelInformatics researchersEvolution issuesTypes of dataManagement systemPerformance resultsRelational designClinical informaticsArchitecturePast approachesRelational techniques
2001
Integration of Multidisciplinary Sensory Data
Miller P, Nadkarni P, Singer M, Marenco L, Hines M, Shepherd G. Integration of Multidisciplinary Sensory Data. Journal Of The American Medical Informatics Association 2001, 8: 34-48. PMID: 11141511, PMCID: PMC134590, DOI: 10.1136/jamia.2001.0080034.Peer-Reviewed Original ResearchConceptsNeuroinformatics researchFlexible data modelDiverse heterogeneous dataHuman Brain ProjectNew informatics technologiesHeterogeneous dataData modelSensory dataRelated toolsInformatics technologiesBrain ProjectBuilding databaseSingle unifying frameworkUnifying frameworkProject approachIntegrationComputer model
2000
Exploring Performance Issues for a Clinical Database Organized Using an Entity-Attribute-Value Representation
Chen R, Nadkarni P, Marenco L, Levin F, Erdos J, Miller P. Exploring Performance Issues for a Clinical Database Organized Using an Entity-Attribute-Value Representation. Journal Of The American Medical Informatics Association 2000, 7: 475-487. PMID: 10984467, PMCID: PMC79043, DOI: 10.1136/jamia.2000.0070475.Peer-Reviewed Original ResearchMeSH KeywordsDatabase Management SystemsDatabases as TopicDatabases, FactualInformation Storage and RetrievalMicrobiologyPilot ProjectsConceptsEAV/CRDatabase schemaSQL statementsDatabase modelDatabase sizeSystem memoryQuery execution timeHeterogeneous biomedical dataSimple SQL statementsQuery efficiencyQuery performancePowerful hardwareQuery strategyEntity attributesDatabase queriesDatabase representationBiomedical dataExecution timeQueriesMore memoryPerformance issuesSchemaValue representationRepresentationCR modelPathMaster
Mattie M, Staib L, Stratmann E, Tagare H, Duncan J, Miller P. PathMaster. Journal Of The American Medical Informatics Association 2000, 7: 404-415. PMID: 10887168, PMCID: PMC61444, DOI: 10.1136/jamia.2000.0070404.Peer-Reviewed Original ResearchMeSH KeywordsAbstracting and IndexingElectronic Data ProcessingEvaluation Studies as TopicImage CytometryInformation Storage and RetrievalPilot ProjectsSubject HeadingsConceptsDigital image databaseText-based descriptionsFeature extraction routineImage databaseIndexing methodSearch enginesFeature extractionCytopathology imagesCross-reference analysisExtraction routinesImagesPrognostic processInformation contentDescriptorsIndividual cell characteristicsDatabaseCell descriptorsRoutinesRecognition trialsEngineIndex dataExtractionMethodDescriptionExploring the Degree of Concordance of Coded and Textual Data in Answering Clinical Queries from a Clinical Data Repository
Stein H, Nadkarni P, Erdos J, Miller P. Exploring the Degree of Concordance of Coded and Textual Data in Answering Clinical Queries from a Clinical Data Repository. Journal Of The American Medical Informatics Association 2000, 7: 42-54. PMID: 10641962, PMCID: PMC61454, DOI: 10.1136/jamia.2000.0070042.Peer-Reviewed Original ResearchHernia, VentralHumansInformation Storage and RetrievalMedical Records Systems, ComputerizedPostoperative ComplicationsPulmonary EmbolismSurgical Wound Infection
1999
Olfactory Receptor Database: a database of the largest eukaryotic gene family
Skoufos E, Healy M, Singer M, Nadkarni P, Miller P, Shepherd G. Olfactory Receptor Database: a database of the largest eukaryotic gene family. Nucleic Acids Research 1999, 27: 343-345. PMID: 9847223, PMCID: PMC148178, DOI: 10.1093/nar/27.1.343.Peer-Reviewed Original ResearchMeSH KeywordsAnimalsChromosome MappingDatabases, FactualEukaryotic CellsGene ExpressionInformation Storage and RetrievalInternetModels, MolecularMultigene FamilyReceptors, OdorantSequence HomologyUser-Computer InterfaceNeuronal database integration: the Senselab EAV data model.
Marenco L, Nadkarni P, Skoufos E, Shepherd G, Miller P. Neuronal database integration: the Senselab EAV data model. AMIA Annual Symposium Proceedings 1999, 102-6. PMID: 10566329, PMCID: PMC2232788.Peer-Reviewed Original ResearchMeSH KeywordsDatabases, FactualHumansHypermediaInformation Storage and RetrievalInternetNervous SystemSystems Integration
1996
PhenoDB: An Integrated Client/Server Database for Linkage and Population Genetics
Cheung K, Nadkarni P, Silverstein S, Kidd J, Pakstis A, Miller P, Kidd K. PhenoDB: An Integrated Client/Server Database for Linkage and Population Genetics. Journal Of Biomedical Informatics 1996, 29: 327-337. PMID: 8812078, DOI: 10.1006/cbmr.1996.0024.Peer-Reviewed Original ResearchMeSH KeywordsAllelesComputer Communication NetworksComputer GraphicsComputer SystemsData Interpretation, StatisticalDatabase Management SystemsGene FrequencyGenetic LinkageGenetic MarkersGenetics, PopulationHumansInformation Storage and RetrievalInformation SystemsPedigreePhenotypeUser-Computer InterfaceConceptsClient/server databaseClient/server architectureData management tasksData analysis tasksUse graphical interfaceServer architectureDatabase applicationsComplex adServer databaseInteractive validationAnalysis tasksGraphical interfaceFile formatManagement tasksLarge datasetsPhenoDBMultipoint linkageGeneric formatHardy-Weinberg ratiosData entryEfficient managementProject managementGenetic marker dataPopulation geneticsTask
1992
Prototyping an institutional IAIMS/UMLS information environment for an academic medical center.
Miller P, Paton J, Clyman J, Powsner S. Prototyping an institutional IAIMS/UMLS information environment for an academic medical center. Journal Of The Medical Library Association 1992, 80: 281-7. PMID: 1326371, PMCID: PMC225668.Peer-Reviewed Original ResearchConceptsIntegrated Academic Information Management SystemUnified Medical Language SystemInformation resourcesAcademic Information Management SystemInformation management systemInformation environmentNetwork-based implementationComputer networksInformation architectureMacintosh computerManagement systemInformation capabilitiesInformation sourcesLanguage systemIntegrated fashionPrototypeDiverse setNational LibraryResourcesCapabilityUsersComputerArchitectureEnvironmentNetworkPFGE MAPPER and PFGE READER: two tools to aid in the analysis and data input of pulse field gel electrophoresis maps.
Shifman M, Nadkarni P, Miller P. PFGE MAPPER and PFGE READER: two tools to aid in the analysis and data input of pulse field gel electrophoresis maps. AMIA Annual Symposium Proceedings 1992, 361-5. PMID: 1482898, PMCID: PMC2248078.Peer-Reviewed Original ResearchClinical Laboratory Information SystemsDatabases, FactualDNAElectrophoresis, Gel, Pulsed-FieldInformation Storage and RetrievalSoftware