2001
An XML application for genomic data interoperation
Cheung K, Liu Y, Kumar A, Snyder M, Gerstein M, Miller P. An XML application for genomic data interoperation. 2001, 97-103. DOI: 10.1109/bibe.2001.974417.Peer-Reviewed Original ResearchXML formatXML-formatted dataExtensible Markup LanguageInternet/WebDifferent data sourcesData interoperationXML technologyXML applicationsMarkup LanguageXML documentsSoftware applicationsWeb sitesBLAST serverGenomic dataStandard languageInteroperationData sourcesData filesNucleotide sequence datasetsSequence datasetsFormatLanguageXMLServerDataset
1992
Molecular dynamics simulation on a network of workstations using a machine-independent parallel programming language
Shifman M, Windemuth A, Schulten K, Miller P. Molecular dynamics simulation on a network of workstations using a machine-independent parallel programming language. Journal Of Biomedical Informatics 1992, 25: 168-180. PMID: 1582193, DOI: 10.1016/0010-4809(92)90019-7.Peer-Reviewed Original ResearchConceptsMachine-independent parallel programming languageParallel programming languageProgramming languageShared memory parallel computerHigh performance Unix workstationsNetwork of workstationsParallel computing approachMemory parallel computersComputing approachNetworked workstationsUNIX workstationsParallel computersExpensive phaseEffective algorithmResearch communityPerformance benchmarksWorkstationsAlgorithmNetworkGlobal motionLanguageComputerLindaSimulationsBenchmarksHarnessing networked workstations as a powerful parallel computer: a general paradigm illustrated using three programs for genetic linkage analysis
Miller P, Nadkarni P, Bercovitz P. Harnessing networked workstations as a powerful parallel computer: a general paradigm illustrated using three programs for genetic linkage analysis. Bioinformatics 1992, 8: 141-147. PMID: 1591609, DOI: 10.1093/bioinformatics/8.2.141.Peer-Reviewed Original ResearchConceptsParallel computersMachine-independent parallel programming languageParallel programming languagePowerful parallel computersParallel programsProgramming languageNetworked workstationsComputational resourcesParallel machinesGeneral paradigmBiological computationWorkstationsComputerLindaNetworkInstitutions networkMathematical techniquesParadigmHardwareMachineComputationLanguageCapabilityResources
1991
Molecular dynamics simulation on a network of workstations using a machine-independent parallel programming language.
Shifman M, Windemuth A, Schulten K, Miller P. Molecular dynamics simulation on a network of workstations using a machine-independent parallel programming language. AMIA Annual Symposium Proceedings 1991, 414-8. PMID: 1807634, PMCID: PMC2247565.Peer-Reviewed Original ResearchConceptsMachine-independent parallel programming languageParallel programming languageProgramming languageShared memory parallel computerHigh performance Unix workstationsNetwork of workstationsParallel computing approachMemory parallel computersComputing approachNetworked workstationsUNIX workstationsParallel computersExpensive phaseEffective algorithmResearch communityPerformance benchmarksWorkstationsAlgorithmNetworkGlobal motionLanguageComputerLindaSimulationsBenchmarks