2022
Joint spectral quantification of MR spectroscopic imaging using linear tangent space alignment‐based manifold learning
Ma C, Han P, Zhuo Y, Djebra Y, Marin T, Fakhri G. Joint spectral quantification of MR spectroscopic imaging using linear tangent space alignment‐based manifold learning. Magnetic Resonance In Medicine 2022, 89: 1297-1313. PMID: 36404676, PMCID: PMC9892363, DOI: 10.1002/mrm.29526.Peer-Reviewed Original ResearchConceptsSubspace-based methodsManifold learningIntrinsic low-dimensional structureGlobal coordinationLearning-based methodsNumerical simulation dataSpatial smoothness constraintSparsity constraintSpace alignmentSubspace modelSmoothness constraintSuperior performanceRoot mean square errorLinear transformationMechanical simulationsLow-dimensionalSquare errorSubspaceExperimental dataSpectroscopic imagingQuantum mechanical simulationsCoordinate alignmentMR spectroscopic imagingSpectral quantificationSimulated dataUnsupervised arterial spin labeling image superresolution via multiscale generative adversarial network
Cui J, Gong K, Han P, Liu H, Li Q. Unsupervised arterial spin labeling image superresolution via multiscale generative adversarial network. Medical Physics 2022, 49: 2373-2385. PMID: 35048390, DOI: 10.1002/mp.15468.Peer-Reviewed Original ResearchConceptsPeak signal-to-noise ratioStructural similarity indexNearest neighbor interpolationSignal-to-noise ratioTrilinear interpolationNeighbor interpolationAblation studiesB-spline interpolationLow-pass-filterLayer-by-layer trainingLoss termLow resolutionClearer structure boundariesLow signal-to-noise ratioIn vivo datasetsImage superresolutionGAN frameworkAdversarial networkB-spline interpolation methodReduce image noiseWeak labelsPrior informationSimilarity indexDipping methodSimulated data
2021
Free‐breathing 3D cardiac T1 mapping with transmit B1 correction at 3T
Han P, Marin T, Djebra Y, Landes V, Zhuo Y, Fakhri G, Ma C. Free‐breathing 3D cardiac T1 mapping with transmit B1 correction at 3T. Magnetic Resonance In Medicine 2021, 87: 1832-1845. PMID: 34812547, PMCID: PMC8810588, DOI: 10.1002/mrm.29097.Peer-Reviewed Original ResearchConceptsFlip-angle estimationCardiac T<sub>1</sub> mappingGradient echo readoutThrough-plane spatial resolutionImaging timePractical imaging timesFree breathingPhantom studyB1 correctionAccelerated imagingIn-planeT)-spaceMyocardial T<sub>1</sub> valuesSubspace-based methodsSpatial resolutionImaging experimentsAcquisition schemeT)-space dataSubject-specific timeCorrectionModified Look-Locker inversion recoveryLook-Locker inversion recoveryTime of data acquisitionAverage imaging timeInversion-recovery sequenceIn vivo imaging of mGlu5 receptor expression in humans with Fragile X Syndrome towards development of a potential biomarker
Mody M, Petibon Y, Han P, Kuruppu D, Ma C, Yokell D, Neelamegam R, Normandin M, Fakhri G, Brownell A. In vivo imaging of mGlu5 receptor expression in humans with Fragile X Syndrome towards development of a potential biomarker. Scientific Reports 2021, 11: 15897. PMID: 34354107, PMCID: PMC8342610, DOI: 10.1038/s41598-021-94967-y.Peer-Reviewed Original ResearchConceptsFragile X syndromeFragile X mental retardation proteinX syndromeLoss of fragile X mental retardation proteinMGlu5 receptor expressionMetabotropic glutamate subtype 5 receptorsDrug occupancy studiesSignificant group differencesFragile X mental retardationHealthy controlsAnterior cingulateMGluR5 availabilityVisuospatial processingMGlu5 receptorsOlfactory cortexBrain areasGroup differencesRetardation proteinGlutamate signalingImages of maleNeurodevelopmental disordersExcessive glutamate signalingGender-matched controlsDisordersMGluR5
2020
Motion correction for PET data using subspace-based real-time MR imaging in simultaneous PET/MR
Marin T, Djebra Y, Han P, Chemli Y, Bloch I, Fakhri G, Ouyang J, Petibon Y, Ma C. Motion correction for PET data using subspace-based real-time MR imaging in simultaneous PET/MR. Physics In Medicine And Biology 2020, 65: 235022. PMID: 33263317, PMCID: PMC7985095, DOI: 10.1088/1361-6560/abb31d.Peer-Reviewed Original ResearchConceptsPositron emission tomography reconstructionMotion-corrected PET reconstructionsPET reconstructionMotion-corrected PET imagesIrregular respiratory motionMotion fieldMotion correction methodMotion correction approachIrregular motion patternsUndersampled k-space dataImage quality of positron emission tomographyQuality of positron emission tomographyMotion patternsLow-rank characteristicsRespiratory motionContrast-to-noise ratioEstimated motion fieldSurrogate signalsMotion correctionK-space dataImage qualityReal-time MR imagingSimultaneous PET/MRMotion artifact reductionPET/MR scannersAttenuation correction using deep Learning and integrated UTE/multi-echo Dixon sequence: evaluation in amyloid and tau PET imaging
Gong K, Han P, Johnson K, El Fakhri G, Ma C, Li Q. Attenuation correction using deep Learning and integrated UTE/multi-echo Dixon sequence: evaluation in amyloid and tau PET imaging. European Journal Of Nuclear Medicine And Molecular Imaging 2020, 48: 1351-1361. PMID: 33108475, PMCID: PMC8411350, DOI: 10.1007/s00259-020-05061-w.Peer-Reviewed Original ResearchConceptsAttenuation correctionResultsThe Dice coefficientPseudo-CT imagesMR-based AC methodsAccurate ACAC accuracyPET imagingDice coefficientQuantitative accuracyAtlas methodAC methodGradient echoNear verticesTau imagingTau PET imagingAlzheimer's diseaseUltrashortCorrectionTau pathologyRapid acquisitionDeep learning methodsMonitoring of Alzheimer’s diseasePET/MRAmyloidIn vivo quantitative mapping of human mitochondrial cardiac membrane potential: a feasibility study
Pelletier-Galarneau M, Petibon Y, Ma C, Han P, Kim S, Detmer F, Yokell D, Guehl N, Normandin M, El Fakhri G, Alpert N. In vivo quantitative mapping of human mitochondrial cardiac membrane potential: a feasibility study. European Journal Of Nuclear Medicine And Molecular Imaging 2020, 48: 414-420. PMID: 32719915, PMCID: PMC7839097, DOI: 10.1007/s00259-020-04878-9.Peer-Reviewed Original ResearchConceptsMembrane potentialBolus injectionHealthy subjectsHematocrit levelsSerial venous blood samplesT1 mapping imagesVenous blood samplesExtracellular space fractionMethodsThirteen healthy subjectsDynamic PET acquisitionCellular membrane potentialGadolinium injectionPrognostic informationVentricular arrhythmiasHeart failureMyocardial hypertrophyMitochondrial membrane potentialCardiac diseaseIn vitro assessmentTherapy monitoringBlood concentrationsPET acquisitionImaging protocolBlood samplesPlasma tracer concentrationMR‐based PET attenuation correction using a combined ultrashort echo time/multi‐echo Dixon acquisition
Han P, Horng D, Gong K, Petibon Y, Kim K, Li Q, Johnson K, Fakhri G, Ouyang J, Ma C. MR‐based PET attenuation correction using a combined ultrashort echo time/multi‐echo Dixon acquisition. Medical Physics 2020, 47: 3064-3077. PMID: 32279317, PMCID: PMC7375929, DOI: 10.1002/mp.14180.Peer-Reviewed Original ResearchConceptsLinear attenuation coefficientPositron emission tomography attenuation correctionPhysical compartmental modelAttenuation correctionShort T<sub>2</sub> componentPET attenuation correctionRadial k-space trajectoryMagnetic resonance (MR)-based methodK-space trajectoriesRadial trajectoryK-spaceAttenuation coefficientDixon acquisitionsPositron emission tomographyWhole white matterMuting methodImage reconstructionImaging speedMR signalMRAC methodPositron emission tomography imagingCorrectionGray matter regionsPhantomMatter regions
2019
Arterial spin labeling MR image denoising and reconstruction using unsupervised deep learning
Gong K, Han P, Fakhri G, Ma C, Li Q. Arterial spin labeling MR image denoising and reconstruction using unsupervised deep learning. NMR In Biomedicine 2019, 35: e4224. PMID: 31865615, PMCID: PMC7306418, DOI: 10.1002/nbm.4224.Peer-Reviewed Original ResearchConceptsSignal-to-noise ratioImage denoisingReconstruction frameworkDeep learning-based image denoisingDeep learning-based denoisersMR image denoisingLearning-based denoisingLow signal-to-noise ratioK-space dataNoisy imagesTraining labelsTraining pairsNetwork inputNeural networkDenoisingIn vivo experiment dataSuperior performanceImaging speedReconstruction processImage qualityLong imaging timesNetworkFrameworkImagesSpatial resolutionBody motion detection and correction in cardiac PET: Phantom and human studies
Sun T, Petibon Y, Han P, Ma C, Kim S, Alpert N, Fakhri G, Ouyang J. Body motion detection and correction in cardiac PET: Phantom and human studies. Medical Physics 2019, 46: 4898-4906. PMID: 31508827, PMCID: PMC6842053, DOI: 10.1002/mp.13815.Peer-Reviewed Original ResearchConceptsList-mode dataMotion-compensated image reconstructionMotion correctionCenter of massPET list-mode dataMotion correction methodMotion detectionMotion estimationImage reconstructionPatient body motionDegrade image qualityNonrigid registrationImage qualityMotion transformationCoincident distributionBody motion detectionCardiac positron emission tomographyBack-projection techniqueCovariance matrixImage volumesBody motionPositron emission tomographyBack-projectionReference framePhantomMR-based cardiac and respiratory motion correction of PET: application to static and dynamic cardiac 18F-FDG imaging
Petibon Y, Sun T, Han P, Ma C, Fakhri G, Ouyang J. MR-based cardiac and respiratory motion correction of PET: application to static and dynamic cardiac 18F-FDG imaging. Physics In Medicine And Biology 2019, 64: 195009. PMID: 31394518, PMCID: PMC7007962, DOI: 10.1088/1361-6560/ab39c2.Peer-Reviewed Original ResearchConceptsMR-based motion correctionRespiratory motion correctionMotion correctionImproved spatial resolutionReconstructed activity concentrationCardiac PET dataSpatial resolutionCoincidence eventsMR-basedPET imagingContrast-to-noise ratioCardiac PET imagingRespiratory phasesMC dataImprove image qualityMR acquisitionQuantitative accuracyCardiac PETPET dataActivity concentrationsMyocardium wallF-FDG PETDynamics studiesImage qualityMotion artifacts
2017
A minimum-phase Shinnar-Le Roux spectral-spatial excitation RF pulse for simultaneous water and lipid suppression in 1H-MRSI of body extremities
Han P, Ma C, Deng K, Hu S, Jee K, Ying K, Chen Y, Fakhri G. A minimum-phase Shinnar-Le Roux spectral-spatial excitation RF pulse for simultaneous water and lipid suppression in 1H-MRSI of body extremities. Magnetic Resonance Imaging 2017, 45: 18-25. PMID: 28917812, PMCID: PMC5709164, DOI: 10.1016/j.mri.2017.09.008.Peer-Reviewed Original Research
2016
Investigation of control scans in pseudo‐continuous arterial spin labeling (pCASL): Strategies for improving sensitivity and reliability of pCASL
Han P, Choi S, Park S. Investigation of control scans in pseudo‐continuous arterial spin labeling (pCASL): Strategies for improving sensitivity and reliability of pCASL. Magnetic Resonance In Medicine 2016, 78: 917-929. PMID: 27690322, DOI: 10.1002/mrm.26474.Peer-Reviewed Original Research
2015
Whole‐brain perfusion imaging with balanced steady‐state free precession arterial spin labeling
Han P, Ye J, Kim E, Choi S, Park S. Whole‐brain perfusion imaging with balanced steady‐state free precession arterial spin labeling. NMR In Biomedicine 2015, 29: 264-274. PMID: 26676386, DOI: 10.1002/nbm.3463.Peer-Reviewed Original ResearchConceptsSignal-to-noise ratioBalanced steady-state free precessionTotal scan timeCompressive sensingReduced susceptibility artifactsPerfusion imagingWhole-brain perfusion imagingScan timeSusceptibility artifactsPseudo-continuous ASLReadout timeCS approachSteady-state free precessionAcquisition of perfusion imagesSegmentation approachFree precessionBSSFP readoutArterial spin labeling (ASL) perfusionSpatial resolutionImage qualityDistortion-freeReadoutHigh-resolutionTemporal resolutionImagesInter-Slice Blood Flow and Magnetization Transfer Effects as A New Simultaneous Imaging Strategy
Han P, Barker J, Kim K, Choi S, Bae K, Park S. Inter-Slice Blood Flow and Magnetization Transfer Effects as A New Simultaneous Imaging Strategy. PLOS ONE 2015, 10: e0140560. PMID: 26466316, PMCID: PMC4605487, DOI: 10.1371/journal.pone.0140560.Peer-Reviewed Original ResearchConceptsAlternate ascending/descending directional navigationPseudo-continuous ASLBlood flowPulsed ASL methodClinically reasonable timeMT asymmetryBlood flow signalsMaps of blood flowSimultaneous blood flowCerebral blood flow signalsPreparation RF pulseFlip anglePerfusion signalBSSFP readoutMT ratioFlow signalsImaging strategiesMagnetization transferASL methodLabeling planeRF pulsesMagnetization transfer effectsSuperposition of signalsPhysiological and Functional Magnetic Resonance Imaging Using Balanced Steady-state Free Precession
Park S, Han P, Choi S. Physiological and Functional Magnetic Resonance Imaging Using Balanced Steady-state Free Precession. Korean Journal Of Radiology 2015, 16: 550-559. PMID: 25995684, PMCID: PMC4435985, DOI: 10.3348/kjr.2015.16.3.550.Peer-Reviewed Original ResearchInvestigation of Inter-Slice Magnetization Transfer Effects as a New Method for MTR Imaging of the Human Brain
Barker J, Han P, Choi S, Bae K, Park S. Investigation of Inter-Slice Magnetization Transfer Effects as a New Method for MTR Imaging of the Human Brain. PLOS ONE 2015, 10: e0117101. PMID: 25664938, PMCID: PMC4321840, DOI: 10.1371/journal.pone.0117101.Peer-Reviewed Original ResearchConceptsBalanced steady-state free precessionFlip angleMagnetization transferMagnetization transfer effectsSteady-state free precessionSaturation pulseModel of MTFree precessionMT-weightedAcquisition parametersMT effectMT ratioDelay timePrecessionMTR imagesHigh SNRInterslicePE stepsMagnetizationFlip