2004
Identification of Target Genes Regulated by FOXC1 Using Nickel Agarose–Based Chromatin Enrichment
Tamimi Y, Lines M, Coca-Prados M, Walter MA. Identification of Target Genes Regulated by FOXC1 Using Nickel Agarose–Based Chromatin Enrichment. Investigative Ophthalmology & Visual Science 2004, 45: 3904-3913. PMID: 15505035, DOI: 10.1167/iovs.04-0628.Peer-Reviewed Original ResearchConceptsChromatin enrichmentIsolation of chromatinChromatin immunoprecipitation assaysTight electrostatic interactionUncharacterized genesChromatin complexesFOXC1 proteinNickel agaroseImmunoprecipitation assaysPoor quality sequencesTarget genesAntibody availabilityCellular eventsCell cycleHistidine residuesGenesFOXC1Biochemical analysisClonesPCR amplificationChromatinIndependent assaysOcular developmentProteinEpithelium cells
1982
Intracellular forms of simian virus 40 nucleoprotein complexes. IV. Micrococcal nuclease digestion
Coca-Prados M, Yu H, Hsu M. Intracellular forms of simian virus 40 nucleoprotein complexes. IV. Micrococcal nuclease digestion. Journal Of Virology 1982, 44: 603-609. PMID: 6292520, PMCID: PMC256304, DOI: 10.1128/jvi.44.2.603-609.1982.Peer-Reviewed Original ResearchConceptsSimian virus 40 nucleoprotein complexesNucleoprotein complexesSV40 chromatinNuclease digestionDNA fragmentsCapsid shellMature virionsNucleosome repeat lengthMicrococcal nuclease digestionGenome-sized DNASV40 nucleoprotein complexesIntracellular formNovel DNA fragmentsStructure of DNAAssembly intermediatesNucleosomal DNA fragmentsMicrococcal nucleaseVirion assemblyMild digestionSV40 virionsChromatinFraction of intermediatesVirion assembly intermediatesVirion maturationCapsid protein
1980
Intracellular forms of simian virus 40 nucleoprotein complexes. III. Study of histone modifications
Coca-Prados M, Vidali G, Hsu M. Intracellular forms of simian virus 40 nucleoprotein complexes. III. Study of histone modifications. Journal Of Virology 1980, 36: 353-360. PMID: 6253661, PMCID: PMC353651, DOI: 10.1128/jvi.36.2.353-360.1980.Peer-Reviewed Original ResearchMeSH KeywordsAcetylationAnimalsCell LineChromatinHaplorhiniHistonesSimian virus 40Viral ProteinsVirionConceptsSimian virus 40 chromatinSimian virus 40 nucleoprotein complexesNucleoprotein complexesHistone modificationsAssembly intermediatesModification patternsMature virionsVirion assembly intermediatesCapsid proteinModification of histonesHistone modification patternsVirion assembly pathwayViral nucleoprotein complexesPulse-chase experimentsHost chromatinHistone patternsAssembly pathwayChromatinHistonesVirion assemblyPolyacrylamide gel electrophoresisAcetylation activityIntracellular formGel electrophoresisViral RNA