2014
Natural Language Processing in Biomedicine: A Unified System Architecture Overview
Doan S, Conway M, Phuong T, Ohno-Machado L. Natural Language Processing in Biomedicine: A Unified System Architecture Overview. Methods In Molecular Biology 2014, 1168: 275-294. PMID: 24870142, DOI: 10.1007/978-1-4939-0847-9_16.Peer-Reviewed Reviews, Practice Guidelines, Standards, and Consensus StatementsConceptsNatural language processingNLP systemsLanguage processingClinical natural language processingBiomedical natural language processingClinical decision supportImportant data sourceArchitectural viewsStructured data fieldsArchitecture overviewData sharingNLP toolsGeneral architectureDecision supportKnowledge resourcesBackground knowledgeData fieldsCollaborative workSystem evaluationData sourcesCurrent research effortsElectronic medical recordsResearch effortsProcessingQuality assurance
2012
Grid Binary LOgistic REgression (GLORE): building shared models without sharing data
Wu Y, Jiang X, Kim J, Ohno-Machado L. Grid Binary LOgistic REgression (GLORE): building shared models without sharing data. Journal Of The American Medical Informatics Association 2012, 19: 758-764. PMID: 22511014, PMCID: PMC3422844, DOI: 10.1136/amiajnl-2012-000862.Peer-Reviewed Original ResearchConceptsIntegrity of communicationCentralized data sourcesTraditional LR modelCentral repositoryComputational costData sourcesData setsSame formatPatient dataComputationGenomic dataRare patternRelevant dataLR modelPrediction valueSetRepositoryPartial elementsFormatClassificationCommunicationModelDataPatient setPerform