2015
Comparing Mycobacterium tuberculosis genomes using genome topology networks
Jiang J, Gu J, Zhang L, Zhang C, Deng X, Dou T, Zhao G, Zhou Y. Comparing Mycobacterium tuberculosis genomes using genome topology networks. BMC Genomics 2015, 16: 85. PMID: 25766780, PMCID: PMC4342819, DOI: 10.1186/s12864-015-1259-0.Peer-Reviewed Original ResearchConceptsGenomic structural variationWhole genome-based phylogenetic analysisGenome-based phylogenetic analysisPhylogenetic analysisM. tuberculosis genomeGene gain/lossTuberculosis genomeComplete gene annotationStructural variationsComparative genomic analysisGene family membersInvestigation of genesRelated bacterial strainsBacterial strainsResistance-related genesGenome topologyGene duplicationGene annotationGenome rearrangementsClosest speciesPhylogenetic studiesPhylogenetic treeGene locationGene homologyGenomic analysis
2011
Hox genes from the parasitic flatworm Schistosoma japonicum
Gu J, Chen S, Dou T, Xu M, Xu J, Zhang L, Hu W, Wang S, Zhou Y. Hox genes from the parasitic flatworm Schistosoma japonicum. Genomics 2011, 99: 59-65. PMID: 22100282, DOI: 10.1016/j.ygeno.2011.10.008.Peer-Reviewed Original ResearchConceptsHox gene familyHox genesGene familyFirst genome-wide characterizationGenome-wide characterizationEvolutionary developmental biologyComparative genomic analysisReal-time polymerase chain reaction experimentsGene copy numberPolymerase chain reaction experimentsOrthology groupsAxis patterningGenome assemblyDevelopmental biologyRelated speciesPhylogenetic analysisGenomic analysisGene expressionSchistosomulum stagePeptide domainGenesCopy numberAnimal speciesHigh expressionSchistosoma japonicum
2010
Analysis of floral transcription factors from Lycoris longituba
He Q, Cui S, Gu J, Zhang H, Wang M, Zhou Y, Zhang L, Huang M. Analysis of floral transcription factors from Lycoris longituba. Genomics 2010, 96: 119-127. PMID: 20406677, DOI: 10.1016/j.ygeno.2010.04.002.Peer-Reviewed Original ResearchConceptsTranscription factorsLycoris longitubaPutative transcription factorSpecific promoter regionsTF familiesTF genesL. longitubaFloral tissuesFlower formPhylogenetic analysisFloral developmentFlower colorGene transcriptionFlowering processTarget genesExpression patternsPromoter regionFlowering phaseReal-time RT-PCRGenesRT-PCRMYBMADSImportant roleTranscription