2020
FrogAncestryCalc: A standalone batch likelihood computation tool for ancestry inference panels catalogued in FROG-kb
Rajeevan H, Soundararajan U, Pakstis AJ, Kidd KK. FrogAncestryCalc: A standalone batch likelihood computation tool for ancestry inference panels catalogued in FROG-kb. Forensic Science International Genetics 2020, 46: 102237. PMID: 31991337, DOI: 10.1016/j.fsigen.2020.102237.Peer-Reviewed Original ResearchMeSH KeywordsComputational BiologyDatabases, GeneticDNA FingerprintingForensic GeneticsGene FrequencyGenetics, PopulationGenotypeHumansLikelihood FunctionsPedigreePolymorphism, Single Nucleotide
2019
Population relationships based on 170 ancestry SNPs from the combined Kidd and Seldin panels
Pakstis AJ, Speed WC, Soundararajan U, Rajeevan H, Kidd JR, Li H, Kidd KK. Population relationships based on 170 ancestry SNPs from the combined Kidd and Seldin panels. Scientific Reports 2019, 9: 18874. PMID: 31827153, PMCID: PMC6906462, DOI: 10.1038/s41598-019-55175-x.Peer-Reviewed Original ResearchMeSH KeywordsDatabases, GeneticGene FrequencyGenetic VariationGenetics, PopulationGenotypeHigh-Throughput Nucleotide SequencingHumansPolymorphism, Single NucleotideConceptsGenetic diversityPopulation relationshipsHuman populationAncestry informative SNP panelsInformative SNP panelsMajor continental regionsHuman reference populationsSNP panelIndividual populationsGenotype dataReference populationNative American populationsDiverse collectionAISNPsAllele frequency databasesWorldwide populationDiversityFrequency databaseAmerican populationReference population dataPopulationSNPsPrincipal component analysisCombined panelCluster patternsGenetic relationships of European, Mediterranean, and SW Asian populations using a panel of 55 AISNPs
Pakstis AJ, Gurkan C, Dogan M, Balkaya HE, Dogan S, Neophytou PI, Cherni L, Boussetta S, Khodjet-El-Khil H, Ben Ammar ElGaaied A, Salvo NM, Janssen K, Olsen GH, Hadi S, Almohammed EK, Pereira V, Truelsen DM, Bulbul O, Soundararajan U, Rajeevan H, Kidd JR, Kidd KK. Genetic relationships of European, Mediterranean, and SW Asian populations using a panel of 55 AISNPs. European Journal Of Human Genetics 2019, 27: 1885-1893. PMID: 31285530, PMCID: PMC6871633, DOI: 10.1038/s41431-019-0466-6.Peer-Reviewed Original ResearchMeSH KeywordsAsian PeopleEthnicityEuropeFemaleGene FrequencyGenetics, PopulationGenotypeHumansMaleMediterranean RegionPolymorphism, Single NucleotideRacial Groups
2018
Improving ancestry distinctions among Southwest Asian populations
Bulbul O, Speed WC, Gurkan C, Soundararajan U, Rajeevan H, Pakstis AJ, Kidd KK. Improving ancestry distinctions among Southwest Asian populations. Forensic Science International Genetics 2018, 35: 14-20. PMID: 29625264, DOI: 10.1016/j.fsigen.2018.03.010.Peer-Reviewed Original ResearchAsiaAsian PeopleGene FrequencyGenetics, PopulationHumansPolymorphism, Single NucleotidePrincipal Component Analysis
2017
The redesigned Forensic Research/Reference on Genetics-knowledge base, FROG-kb
Kidd KK, Soundararajan U, Rajeevan H, Pakstis AJ, Moore KN, Ropero-Miller JD. The redesigned Forensic Research/Reference on Genetics-knowledge base, FROG-kb. Forensic Science International Genetics 2017, 33: 33-37. PMID: 29175726, DOI: 10.1016/j.fsigen.2017.11.009.Peer-Reviewed Original ResearchMeSH KeywordsDatabases, GeneticForensic GeneticsGene FrequencyGenetics, PopulationHumansInternetLikelihood FunctionsPolymorphism, Single NucleotideProbabilityUser-Computer InterfaceConceptsWeb interfaceFROG-kbAccessible web interfaceDatabase interfaceEasy navigationNew reference panelsWeb sitesGenetic knowledge baseIndividual identification single nucleotide polymorphismsExtensive redesignExtensive documentationOngoing updatesComprehensive toolInterfaceOngoing researchForensicsNavigationIndividual identification SNPsFunctional enhancementReference population dataPrototypeDocumentationIncreasing the reference populations for the 55 AISNP panel: the need and benefits
Pakstis AJ, Kang L, Liu L, Zhang Z, Jin T, Grigorenko EL, Wendt FR, Budowle B, Hadi S, Al Qahtani MS, Morling N, Mogensen HS, Themudo GE, Soundararajan U, Rajeevan H, Kidd JR, Kidd KK. Increasing the reference populations for the 55 AISNP panel: the need and benefits. International Journal Of Legal Medicine 2017, 131: 913-917. PMID: 28070634, PMCID: PMC5491587, DOI: 10.1007/s00414-016-1524-z.Peer-Reviewed Original ResearchMeSH KeywordsDatabases, GeneticEthnicityGene FrequencyGenetics, PopulationGenotypeHigh-Throughput Nucleotide SequencingHumansPolymorphism, Single NucleotideRacial Groups
2016
Evaluating a subset of ancestry informative SNPs for discriminating among Southwest Asian and circum-Mediterranean populations
Bulbul O, Cherni L, Khodjet-el-khil H, Rajeevan H, Kidd KK. Evaluating a subset of ancestry informative SNPs for discriminating among Southwest Asian and circum-Mediterranean populations. Forensic Science International Genetics 2016, 23: 153-158. PMID: 27160361, DOI: 10.1016/j.fsigen.2016.04.010.Peer-Reviewed Original Research
2015
52 additional reference population samples for the 55 AISNP panel
Pakstis AJ, Haigh E, Cherni L, ElGaaied AB, Barton A, Evsanaa B, Togtokh A, Brissenden J, Roscoe J, Bulbul O, Filoglu G, Gurkan C, Meiklejohn KA, Robertson JM, Li CX, Wei YL, Li H, Soundararajan U, Rajeevan H, Kidd JR, Kidd KK. 52 additional reference population samples for the 55 AISNP panel. Forensic Science International Genetics 2015, 19: 269-271. PMID: 26355664, DOI: 10.1016/j.fsigen.2015.08.003.Peer-Reviewed Original Research
2014
Application of six IrisPlex SNPs and comparison of two eye color prediction systems in diverse Eurasia populations
Yun L, Gu Y, Rajeevan H, Kidd KK. Application of six IrisPlex SNPs and comparison of two eye color prediction systems in diverse Eurasia populations. International Journal Of Legal Medicine 2014, 128: 447-453. PMID: 24395150, DOI: 10.1007/s00414-013-0953-1.Peer-Reviewed Original Research