2024
Accelerated 3D metabolite T1 mapping of the brain using variable‐flip‐angle SPICE
Zhao Y, Li Y, Guo R, Jin W, Sutton B, Ma C, Fakhri G, Li Y, Luo J, Liang Z. Accelerated 3D metabolite T1 mapping of the brain using variable‐flip‐angle SPICE. Magnetic Resonance In Medicine 2024, 92: 1310-1322. PMID: 38923032, DOI: 10.1002/mrm.30200.Peer-Reviewed Original ResearchConceptsLow-rank tensor modelGeneralized series modelMetabolite TExperimental resultsBrain metabolitesClinically acceptable scan timeEfficient encodingPhantom experimental resultsAcceptable scan timeNoisy dataSparse samplingImaging problemsData processingHealthy subject dataVariable flip angleFlip angleTensor modelSaturation effectsQuantitative metabolic imagingMRSI techniquePhantomScan timeData acquisitionMetabolic imagingT1 mapping
2022
Joint spectral quantification of MR spectroscopic imaging using linear tangent space alignment‐based manifold learning
Ma C, Han P, Zhuo Y, Djebra Y, Marin T, Fakhri G. Joint spectral quantification of MR spectroscopic imaging using linear tangent space alignment‐based manifold learning. Magnetic Resonance In Medicine 2022, 89: 1297-1313. PMID: 36404676, PMCID: PMC9892363, DOI: 10.1002/mrm.29526.Peer-Reviewed Original ResearchMeSH KeywordsAlgorithmsBrainComputer SimulationHumansMagnetic Resonance ImagingMagnetic Resonance SpectroscopyProton Magnetic Resonance SpectroscopyConceptsSubspace-based methodsManifold learningIntrinsic low-dimensional structureGlobal coordinationLearning-based methodsNumerical simulation dataSpatial smoothness constraintSparsity constraintSpace alignmentSubspace modelSmoothness constraintSuperior performanceRoot mean square errorLinear transformationMechanical simulationsLow-dimensionalSquare errorSubspaceExperimental dataSpectroscopic imagingQuantum mechanical simulationsCoordinate alignmentMR spectroscopic imagingSpectral quantificationSimulated data
2021
Magnetic resonance parameter mapping using model‐guided self‐supervised deep learning
Liu F, Kijowski R, Fakhri G, Feng L. Magnetic resonance parameter mapping using model‐guided self‐supervised deep learning. Magnetic Resonance In Medicine 2021, 85: 3211-3226. PMID: 33464652, PMCID: PMC9185837, DOI: 10.1002/mrm.28659.Peer-Reviewed Original ResearchMeSH KeywordsArtifactsDeep LearningImage Processing, Computer-AssistedMagnetic Resonance ImagingMagnetic Resonance SpectroscopyConceptsMR parameter mappingSupervised learningReconstruction qualityImaging modelSelf-supervised deep learningStandard supervised learningConventional iterative reconstructionData setsDeep learning purposesSuperior reconstruction qualityImprove reconstruction qualityQuantitative MRI applicationsUndersampled k-spacePresence of noisePhysical modeling constraintsSparsity constraintNetwork trainingReconstruction performanceDeep learningReconstruction frameworkMap extractionImprove image qualitySuppress noiseGround truthUndersampling artifacts
2020
A Chelate-Free Nano-Platform for Incorporation of Diagnostic and Therapeutic Isotopes
Gholami Y, Josephson L, Akam E, Caravan P, Wilks M, Pan X, Maschmeyer R, Kolnick A, Fakhri G, Normandin M, Kuncic Z, Yuan H. A Chelate-Free Nano-Platform for Incorporation of Diagnostic and Therapeutic Isotopes. International Journal Of Nanomedicine 2020, 15: 31-47. PMID: 32021163, PMCID: PMC6954846, DOI: 10.2147/ijn.s227931.Peer-Reviewed Original ResearchMeSH KeywordsChelating AgentsChromatography, GelCopper RadioisotopesDynamic Light ScatteringFerrosoferric OxideIsotope LabelingLutetiumMagnetic Resonance SpectroscopyNanoparticlesRadioisotopesRadiopharmaceuticalsConceptsDynamic light scatteringRadiochemical yieldSize exclusion chromatographyThin-layer chromatographyEmpty d orbitalsF-orbital electronsD-orbitalsICP-MSRelaxation spectrometryRadioactive isotopologuesMass spectrometryInductively coupled plasma mass spectrometryChelate-freeNonradioactive metalsPositive chargePlasma mass spectrometryFh NPsNanoparticlesReaction timeLight scatteringMetalExclusion chromatographySpectrometryApproved drugsReaction
2017
A minimum-phase Shinnar-Le Roux spectral-spatial excitation RF pulse for simultaneous water and lipid suppression in 1H-MRSI of body extremities
Han P, Ma C, Deng K, Hu S, Jee K, Ying K, Chen Y, Fakhri G. A minimum-phase Shinnar-Le Roux spectral-spatial excitation RF pulse for simultaneous water and lipid suppression in 1H-MRSI of body extremities. Magnetic Resonance Imaging 2017, 45: 18-25. PMID: 28917812, PMCID: PMC5709164, DOI: 10.1016/j.mri.2017.09.008.Peer-Reviewed Original ResearchMeSH KeywordsAlgorithmsHumansImage Processing, Computer-AssistedLegLipidsMagnetic Resonance SpectroscopyMuscle, SkeletalPhantoms, ImagingProtonsWaterMagnetic Resonance–based Motion Correction for Quantitative PET in Simultaneous PET-MR Imaging
Rakvongthai Y, Fakhri G. Magnetic Resonance–based Motion Correction for Quantitative PET in Simultaneous PET-MR Imaging. PET Clinics 2017, 12: 321-327. PMID: 28576170, PMCID: PMC6452624, DOI: 10.1016/j.cpet.2017.02.004.Peer-Reviewed Original ResearchConceptsSimultaneous PET-MRQuantitative PET imagingMotion correctionSimultaneous PET-MR imagingReconstructed PET imagesMotion-corrected imagesPET-MRMotion correction strategiesPET imagingPET-MR imagingQuantitation of PET imagesPatient studiesQuantitative PETImage qualityMotionCorrectionPhantomAnatomical informationCorrection strategyMR imaging
2015
Synergistic role of simultaneous PET/MRI-MRS in soft tissue sarcoma metabolism imaging
Zhang X, Chen Y, Lim R, Huang C, Chebib I, Fakhri G. Synergistic role of simultaneous PET/MRI-MRS in soft tissue sarcoma metabolism imaging. Magnetic Resonance Imaging 2015, 34: 276-279. PMID: 26523656, PMCID: PMC4761342, DOI: 10.1016/j.mri.2015.10.027.Peer-Reviewed Original ResearchConceptsSoft tissue sarcomasMagnetic resonance imagingHigh (18)F-FDG uptakeT2 hyperintense massMagnetic resonance spectroscopyNeoadjuvant radiotherapyPathological resultsTumor marginsTissue sarcomasImaging findingsPET/MRI scansPET scansRight thighRadiotherapyNormal tissuesEmission tomographyResonance imagingMetabolite profilesSarcomaPET/MRIChemoRTChemoradiationSynergistic rolePETSurgery