2024
Disentangled multimodal brain MR image translation via transformer-based modality infuser
Cho J, Liu X, Xing F, Ouyang J, Fakhri G, Park J, Woo J. Disentangled multimodal brain MR image translation via transformer-based modality infuser. Progress In Biomedical Optics And Imaging 2024, 12926: 129262h-129262h-6. DOI: 10.1117/12.3006502.Peer-Reviewed Original ResearchConvolutional neural networkBrain tumor segmentation taskModality-specific featuresTumor segmentation taskImage translationAdversarial networkSegmentation taskSynthesis qualityBrain MR imagesNeural networkMR modalitiesAcquired imagesExperimental resultsNetworkGlobal relationshipsDisease diagnosisImagesEncodingBraTSDatasetFeaturesTaskMethodSuperiorityMR imaging
2023
Attenuation correction for PET imaging using conditional denoising diffusion probabilistic model
Dong Y, Jang S, Han P, Johnson K, Ma C, Fakhri G, Li Q, Gong K. Attenuation correction for PET imaging using conditional denoising diffusion probabilistic model. 2023, 00: 1-1. DOI: 10.1109/nssmicrtsd49126.2023.10338188.Peer-Reviewed Original ResearchDiffusion probabilistic modelGenerative adversarial networkConditional encodingAttenuation correctionDenoising diffusion probabilistic modelLow-level featuresProbabilistic modelAttenuation coefficientAdversarial networkExtract featuresPET/MR systemsEncodingPET acquisitionNovel methodDiffusion encodingMagnetic resonanceImagesPET imagingCorrectionMR imagingUNetAttenuationNetworkFeaturesResonance
2022
Feasibility study of clinical target volume definition for soft-tissue sarcoma using muscle fiber orientations derived from diffusion tensor imaging
Shusharina N, Liu X, Coll-Font J, Foster A, Fakhri G, Woo J, Bortfeld T, Nguyen C. Feasibility study of clinical target volume definition for soft-tissue sarcoma using muscle fiber orientations derived from diffusion tensor imaging. Physics In Medicine And Biology 2022, 67: 155013. PMID: 35817048, PMCID: PMC9344976, DOI: 10.1088/1361-6560/ac8045.Peer-Reviewed Original ResearchConceptsClinical target volumeSoft tissue sarcomasHealthy volunteersClinical target volume definitionClinical target volume delineationRight thighGross tumor volumeTarget volume definitionEcho-planar acquisitionsTarget volumeAuto-segmentationTumor volumeVolume definitionSarcoma patientsTissue sarcomasCT planeConvolutional neural networkT2-weightedCancer CenterPlanar acquisitionImaging sessionFat suppressionMR imagingSarcomaAnatomical orientation
2021
Dual-Cycle Constrained Bijective Vae-Gan For Tagged-To-Cine Magnetic Resonance Image Synthesis
Liu X, Xing F, Prince J, Carass A, Stone M, Fakhri G, Woo J. Dual-Cycle Constrained Bijective Vae-Gan For Tagged-To-Cine Magnetic Resonance Image Synthesis. 2011 IEEE International Symposium On Biomedical Imaging: From Nano To Macro 2021, 00: 1448-1452. PMID: 34707796, PMCID: PMC8547333, DOI: 10.1109/isbi48211.2021.9433852.Peer-Reviewed Original ResearchMR image synthesisAdversarial trainingImage synthesisVAE-GANMR imagingTagged MR imagesCine MR imagingMoving organsSuperior performanceMagnetic resonance imagingAcquisition timeCycle reconstructionHealthy subjectsResonance imagingAnatomical resolutionComparison methodMotion analysisTagged magnetic resonance imagingTissue segmentationImagesScanning session
2019
Attenuation correction using 3D deep convolutional neural network for brain 18F-FDG PET/MR: Comparison with Atlas, ZTE and CT based attenuation correction
Blanc-Durand P, Khalife M, Sgard B, Kaushik S, Soret M, Tiss A, Fakhri G, Habert M, Wiesinger F, Kas A. Attenuation correction using 3D deep convolutional neural network for brain 18F-FDG PET/MR: Comparison with Atlas, ZTE and CT based attenuation correction. PLOS ONE 2019, 14: e0223141. PMID: 31589623, PMCID: PMC6779234, DOI: 10.1371/journal.pone.0223141.Peer-Reviewed Original ResearchConceptsZero echo timeAC mapsAttenuation correctionPET attenuation correctionCT-based ACComputed tomographyAC methodPhoton attenuationZTE-ACInvestigation of suspected dementiaMR imagingBrain computed tomographyAtlas-ACBrain metabolismZTE-MRIConvolutional neural networkEcho timeHead atlasFDG-PET/MRPET imagingLow biasRegions-of-interestPatientsCorrectionNeural networkFree-Breathing Three-Dimensional T1 Mapping of the Heart Using Subspace-Based Data Acquisition and Image Reconstruction
Han P, Horng D, Marin T, Petibon Y, Ouyang J, Fakhri G, Ma C. Free-Breathing Three-Dimensional T1 Mapping of the Heart Using Subspace-Based Data Acquisition and Image Reconstruction. Annual International Conference Of The IEEE Engineering In Medicine And Biology Society (EMBC) 2019, 00: 4008-4011. PMID: 31946750, DOI: 10.1109/embc.2019.8856511.Peer-Reviewed Original ResearchConceptsRespiratory motionRespiratory gatingLongitudinal relaxation timeSubspace-based methodsLow-rank tensorMagnetic resonance imagingRelaxation timeT1 mappingT)-spaceSubspace-basedSparsity constraintDynamic MR imagingReconstructed mapsSpatiotemporal correlationThree-dimensionalCardiac MRHealthy subjectsIn vivo dataMagnetizationResonance imagingImage functionMR imagingData acquisitionClinical applicationTensor
2017
Speech Map: a statistical multimodal atlas of 4D tongue motion during speech from tagged and cine MR images
Woo J, Xing F, Stone M, Green J, Reese T, Brady T, Wedeen V, Prince J, Fakhri G. Speech Map: a statistical multimodal atlas of 4D tongue motion during speech from tagged and cine MR images. Computer Methods In Biomechanics And Biomedical Engineering Imaging & Visualization 2017, 7: 361-373. PMID: 31328049, PMCID: PMC6640640, DOI: 10.1080/21681163.2017.1382393.Peer-Reviewed Original ResearchMotion fieldMotion estimationTongue motionAnatomical configurationComplex motion fieldsCourse of speechCine MR imagingMotion informationInternal motionsGlossectomy patientsHealthy subjectsCine MRITongue functionMR imagingSpeech mappingClinical applicationAnatomical referenceTime course of speechTime courseSpeechMagnetic Resonance–based Motion Correction for Quantitative PET in Simultaneous PET-MR Imaging
Rakvongthai Y, Fakhri G. Magnetic Resonance–based Motion Correction for Quantitative PET in Simultaneous PET-MR Imaging. PET Clinics 2017, 12: 321-327. PMID: 28576170, PMCID: PMC6452624, DOI: 10.1016/j.cpet.2017.02.004.Peer-Reviewed Original ResearchConceptsSimultaneous PET-MRQuantitative PET imagingMotion correctionSimultaneous PET-MR imagingReconstructed PET imagesMotion-corrected imagesPET-MRMotion correction strategiesPET imagingPET-MR imagingQuantitation of PET imagesPatient studiesQuantitative PETImage qualityMotionCorrectionPhantomAnatomical informationCorrection strategyMR imagingA four-dimensional motion field atlas of the tongue from tagged and cine magnetic resonance imaging
Xing F, Prince J, Stone M, Wedeen V, Fakhri G, Woo J. A four-dimensional motion field atlas of the tongue from tagged and cine magnetic resonance imaging. Proceedings Of SPIE--the International Society For Optical Engineering 2017, 10133: 101331h-101331h-6. PMID: 29081569, PMCID: PMC5659618, DOI: 10.1117/12.2254363.Peer-Reviewed Original ResearchMotion fieldDense motion fieldTongue motionAtlas spaceThree-dimensional vector fieldsTagged MR imagesCine imagesImage atlasCine MR imagingAtlas constructionMagnetic resonanceVector fieldsFieldMotionImagesRepresentationQuantitative representationMR imagingAtlasDeformation fieldInter-subject variabilityResonanceCine magnetic resonance imagingInter-subject variationTensor
2013
Bias Atlases for Segmentation-Based PET Attenuation Correction Using PET-CT and MR
Ouyang J, Chun Y, Petibon Y, Bonab A, Alpert N, Fakhri G. Bias Atlases for Segmentation-Based PET Attenuation Correction Using PET-CT and MR. IEEE Transactions On Nuclear Science 2013, 60: 3373-3382. PMID: 24966415, PMCID: PMC4067048, DOI: 10.1109/tns.2013.2278624.Peer-Reviewed Original ResearchAttenuation correctionBias imagesLung density variationsPET attenuation correctionPET-MR scannersAttenuation mapFat identificationOriginal CTPET reconstructionOverall standard deviationPET-MRMR imagingVariation of biasDensity variationsCT-based studyPET accuracyPET-CTStandard deviation of biasCorrectionFat segmentationTissue classesPatientsSoft tissueAttenuationLung