2021
RCandy: an R package for visualizing homologous recombinations in bacterial genomes
Chaguza C, Tonkin-Hill G, Lo S, Hadfield J, Croucher N, Harris S, Bentley S. RCandy: an R package for visualizing homologous recombinations in bacterial genomes. Bioinformatics 2021, 38: 1450-1451. PMID: 34864895, PMCID: PMC8826011, DOI: 10.1093/bioinformatics/btab814.Peer-Reviewed Original ResearchConceptsBacterial genomesHomologous recombinationRecombination eventsImportant evolutionary processPlatform-independent R packageGenomic sequence diversityValuable biological insightsSuch recombination eventsR packageGenomic regionsSequence diversityBiological insightsEvolutionary processesGenomeSupplementary dataRecombinationMIT licenseProkaryotesBioinformaticsDiversityBacteriaMacOSXAdaptationPneumococcal Colonization and Virulence Factors Identified Via Experimental Evolution in Infection Models
Green AE, Howarth D, Chaguza C, Echlin H, Langendonk RF, Munro C, Barton TE, Hinton J, Bentley SD, Rosch JW, Neill DR. Pneumococcal Colonization and Virulence Factors Identified Via Experimental Evolution in Infection Models. Molecular Biology And Evolution 2021, 38: 2209-2226. PMID: 33502519, PMCID: PMC8136498, DOI: 10.1093/molbev/msab018.Peer-Reviewed Original Research
2019
Bacterial survival: evolve and adapt or perish
Chaguza C. Bacterial survival: evolve and adapt or perish. Nature Reviews Microbiology 2019, 18: 5-5. PMID: 31748737, DOI: 10.1038/s41579-019-0303-5.Peer-Reviewed Original Research