Chantal Vogels, PhD
Cards
Additional Titles
Affiliate Faculty, Yale Institute for Global Health
Contact Info
Epidemiology of Microbial Diseases
60 College Street
New Haven, CT 06510
United States
About
Titles
Assistant Professor of Epidemiology (Microbial Diseases)
Affiliate Faculty, Yale Institute for Global Health
Biography
I am an Assistant Professor in the Department of Epidemiology of Microbial Diseases at the Yale School of Public Health. I have a background in ecology, medical entomology, virology, and genomics.
During my PhD at Wageningen University & Research, I studied the role of Culex pipiens mosquitoes in transmission of West Nile virus in Europe. My interdisciplinary project involved local mosquito surveillance in the field, vector competence studies in the laboratory, and modeling. These studies led to important insights in the role of climate as a limiting factor to transmission of West Nile virus in Europe. During my postdoc at the Yale School of Public Health, I shifted my focus to using genomics to understand the role of virus evolution in the unexpected scale and severity of the Zika virus epidemic in the Americas. Using a reverse genetics platform, we engineered Zika virus mutations and determined their impact on transmission by Aedes aegypti mosquitoes in the laboratory. Since the start of the COVID-19 pandemic, I temporarily shifted my research focus to utilize my expertise in molecular virology and genomics to respond to a global public health emergency. Our team led the laboratory development of a saliva-based test called SalivaDirect that received Emergency Use Authorization from the U.S. Food and Drug Administration, and we established the Yale SARS-CoV-2 Genomic Surveillance Initiative through which >25,000 SARS-CoV-2 samples were sequenced. Building on these experiences, we recently developed amplicon sequencing approaches for emerging viruses (i.e., human monkeypox virus) and arboviruses (i.e., dengue virus and Powassan virus) to uncover their patterns of emergence and spread.
In the Vogels Lab, we use experimental approaches to study the ecology, evolution, and epidemiology of arthropod-borne (arbo)viruses. By combining field, laboratory, and computational approaches, we investigate how complex interactions between arboviruses, their vectors, and the environment influence their transmission dynamics. Our goal is to increase our understanding of the drivers and barriers of arbovirus transmission to improve prevention and control strategies.
Appointments
Epidemiology of Microbial Diseases
Assistant ProfessorPrimary
Other Departments & Organizations
- Epidemiology of Microbial Diseases
- Epidemiology of Microbial Diseases (EMD)
- Janeway Society
- Microbiology
- Virology Laboratories
- Yale Combined Program in the Biological and Biomedical Sciences (BBS)
- Yale Institute for Global Health
- Yale School of Public Health
- Yale School of Public Health - NEW
Education & Training
- PhD
- Wageningen University & Research, Laboratory of Entomology (2017)
- MSc
- Wageningen University & Research (2012)
- BSc
- Wageningen University & Research (2010)
Research
Overview
Medical Research Interests
Public Health Interests
ORCID
0000-0003-0027-6480- View Lab Website
Vogels Lab
Research at a Glance
Yale Co-Authors
Publications Timeline
Research Interests
Nathan Grubaugh, PhD
Akiko Iwasaki, PhD
Albert Ko, MD
Chaney Kalinich, MPH
Benjamin Goldman-Israelow, MD/PhD
M. Catherine Muenker, MS
Zika Virus Infection
Dengue
Coinfection
Publications
2024
Analysis of Powassan Virus Genome Sequences from Human Cases Reveals Substantial Genetic Diversity with Implications for Molecular Assay Development
Klontz E, Chowdhury N, Holbrook N, Solomon I, Telford S, Aliota M, Vogels C, Grubaugh N, Helgager J, Hughes H, Velez J, Piantadosi A, Chiu C, Lemieux J, Branda J. Analysis of Powassan Virus Genome Sequences from Human Cases Reveals Substantial Genetic Diversity with Implications for Molecular Assay Development. Viruses 2024, 16: 1653. PMID: 39599768, PMCID: PMC11599074, DOI: 10.3390/v16111653.Peer-Reviewed Original ResearchConceptsGenome sequenceDiversity of genomic sequencesHuman infectionsPCR assay designVirus genome sequencesAssay designIn silico analysisBiology of infectionViral genomic dataGenetic diversityGenomic dataSensitivity of PCRGenomeCladePCR assayHuman diseasesVirulent strainsPCR designPowassan virusSequenceImmunocompromised patientsPCRTick-borne virusesAssay developmentClinical diagnosticsPrevalence and Genetic Diversity of Deer Tick Virus (Powassan Virus, Lineage II) in Ixodes scapularis Ticks in Five Habitats at a Nature Reserve in Southern Maine, United States.
Robich R, Piantadosi A, Elias S, Cosenza D, Schneider E, Baxter L, LaFon E, Lubelczyk C, Meagher M, Vogels C, Smith R. Prevalence and Genetic Diversity of Deer Tick Virus (Powassan Virus, Lineage II) in Ixodes scapularis Ticks in Five Habitats at a Nature Reserve in Southern Maine, United States. American Journal Of Tropical Medicine And Hygiene 2024 PMID: 39406212, DOI: 10.4269/ajtmh.23-0643.Peer-Reviewed Original ResearchConceptsDeer tick virusHabitat typesGenetic diversityIxodes scapularis ticksInvasive vegetationAdult ticksLong-distance dispersalTick virusShort-range dispersalVirus prevalenceTick-borne encephalitis virusPhylogenetic analysisLineage IIHabitatPowassan virus lineage IIEnzootic fociNature ReserveNative vegetationTicksDeerNational Estuarine Research ReserveCompared to 0UnderstoryEncephalitis virusForestA new lineage nomenclature to aid genomic surveillance of dengue virus
Hill V, Cleemput S, Pereira J, Gifford R, Fonseca V, Tegally H, Brito A, Ribeiro G, de Souza V, Brcko I, Ribeiro I, De Lima I, Slavov S, Sampaio S, Elias M, Tran V, Kien D, Huynh T, Yacoub S, Dieng I, Salvato R, Wallau G, Gregianini T, Godinho F, Vogels C, Breban M, Leguia M, Jagtap S, Roy R, Hapuarachchi C, Mwanyika G, Giovanetti M, Alcantara L, Faria N, Carrington C, Hanley K, Holmes E, Dumon W, Lima A, de Oliveira T, Grubaugh N. A new lineage nomenclature to aid genomic surveillance of dengue virus. PLOS Biology 2024, 22: e3002834. PMID: 39283942, PMCID: PMC11426435, DOI: 10.1371/journal.pbio.3002834.Peer-Reviewed Original ResearchCitationsAltmetricMeSH Keywords and ConceptsConceptsGenomic surveillanceSub-genotype levelPartial genome sequencesDengue virusViral genomic diversityClade sizeGenome sequenceGenomic diversityPhylogenetic studiesPhylogenetic distanceSequence dataMinor lineageVirus classificationLineagesSurveillance of dengue virusDiversityAssignment toolComplex patternsVirusCladeSequenceGeographical areasGenotypesNomenclatureEndemic settingsSARS-CoV-2-related bat viruses evade human intrinsic immunity but lack efficient transmission capacity
Peña-Hernández M, Alfajaro M, Filler R, Moriyama M, Keeler E, Ranglin Z, Kong Y, Mao T, Menasche B, Mankowski M, Zhao Z, Vogels C, Hahn A, Kalinich C, Zhang S, Huston N, Wan H, Araujo-Tavares R, Lindenbach B, Homer R, Pyle A, Martinez D, Grubaugh N, Israelow B, Iwasaki A, Wilen C. SARS-CoV-2-related bat viruses evade human intrinsic immunity but lack efficient transmission capacity. Nature Microbiology 2024, 9: 2038-2050. PMID: 39075235, DOI: 10.1038/s41564-024-01765-z.Peer-Reviewed Original ResearchAltmetricConceptsBat coronavirusesRelatives of SARS-CoV-2Upper airwayUpper airways of miceEpithelial cellsHuman nasal epithelial cellsAirways of miceMajor histocompatibility complex class I.SARS-CoV-2Nasal epithelial cellsHistocompatibility complex class I.Human bronchial epithelial cellsGenetic similarityBronchial epithelial cellsInnate immune restrictionCoronavirus replicationFunctional characterizationMolecular cloningReduced pathogenesisImpaired replicationBat virusCoronavirus pathogenesisPandemic potentialHigh-risk familiesImmune restrictionDengueSeq: a pan-serotype whole genome amplicon sequencing protocol for dengue virus
Vogels C, Hill V, Breban M, Chaguza C, Paul L, Sodeinde A, Taylor-Salmon E, Ott I, Petrone M, Dijk D, Jonges M, Welkers M, Locksmith T, Dong Y, Tarigopula N, Tekin O, Schmedes S, Bunch S, Cano N, Jaber R, Panzera C, Stryker I, Vergara J, Zimler R, Kopp E, Heberlein L, Herzog K, Fauver J, Morrison A, Michael S, Grubaugh N. DengueSeq: a pan-serotype whole genome amplicon sequencing protocol for dengue virus. BMC Genomics 2024, 25: 433. PMID: 38693476, PMCID: PMC11062901, DOI: 10.1186/s12864-024-10350-x.Peer-Reviewed Original ResearchCitationsAltmetricMeSH Keywords and ConceptsConceptsAmplicon sequencing protocolsPrimer schemeSequencing protocolGenomic surveillanceDengue virus serotypesAmplicon sequencing workflowClinical specimensHigh genome coverageWhole-genome sequencingDengue virusVirus serotypesGenome coverageVirus stocksGenetic diversitySequencing instrumentsSequencing workflowGenotype VIDiverse serotypesSequence of samplesGenotype IVPrimersSurveillance of dengue virusSerotypesVirus copiesSerotype-specificTravel surveillance uncovers dengue virus dynamics and introductions in the Caribbean
Taylor-Salmon E, Hill V, Paul L, Koch R, Breban M, Chaguza C, Sodeinde A, Warren J, Bunch S, Cano N, Cone M, Eysoldt S, Garcia A, Gilles N, Hagy A, Heberlein L, Jaber R, Kassens E, Colarusso P, Davis A, Baudin S, Rico E, Mejía-Echeverri Á, Scott B, Stanek D, Zimler R, Muñoz-Jordán J, Santiago G, Adams L, Paz-Bailey G, Spillane M, Katebi V, Paulino-Ramírez R, Mueses S, Peguero A, Sánchez N, Norman F, Galán J, Huits R, Hamer D, Vogels C, Morrison A, Michael S, Grubaugh N. Travel surveillance uncovers dengue virus dynamics and introductions in the Caribbean. Nature Communications 2024, 15: 3508. PMID: 38664380, PMCID: PMC11045810, DOI: 10.1038/s41467-024-47774-8.Peer-Reviewed Original ResearchCitationsAltmetricMeSH Keywords and ConceptsConceptsDengue virusDENV-3Rates of severe diseaseMosquito-borne viral diseasePublic health threatPattern of spreadSevere diseaseLocal surveillanceGenomic epidemiologyEpidemiological patternsVirus surveillanceSurveillanceHealth threatSerotypesDiseaseIncreased rateDengueViral diseasesVirusInfected travelersFrequent outbreaksIntranasal neomycin evokes broad-spectrum antiviral immunity in the upper respiratory tract
Mao T, Kim J, Peña-Hernández M, Valle G, Moriyama M, Luyten S, Ott I, Gomez-Calvo M, Gehlhausen J, Baker E, Israelow B, Slade M, Sharma L, Liu W, Ryu C, Korde A, Lee C, Monteiro V, Lucas C, Dong H, Yang Y, Initiative Y, Gopinath S, Wilen C, Palm N, Dela Cruz C, Iwasaki A, Vogels C, Hahn A, Chen N, Breban M, Koch T, Chaguza C, Tikhonova I, Castaldi C, Mane S, De Kumar B, Ferguson D, Kerantzas N, Peaper D, Landry M, Schulz W, Grubaugh N. Intranasal neomycin evokes broad-spectrum antiviral immunity in the upper respiratory tract. Proceedings Of The National Academy Of Sciences Of The United States Of America 2024, 121: e2319566121. PMID: 38648490, PMCID: PMC11067057, DOI: 10.1073/pnas.2319566121.Peer-Reviewed Original ResearchCitationsAltmetricMeSH Keywords and ConceptsConceptsInterferon-stimulated genesRespiratory infectionsStrains of influenza A virusTreatment of respiratory viral infectionsRespiratory virus infectionsInfluenza A virusMouse model of COVID-19Respiratory viral infectionsNeomycin treatmentExpression of interferon-stimulated genesUpper respiratory infectionInterferon-stimulated gene expressionLower respiratory infectionsBroad spectrum of diseasesAdministration of neomycinRespiratory viral diseasesDisease to patientsUpper respiratory tractIntranasal deliveryCongenic miceIntranasal applicationNasal mucosaSevere acute respiratory syndrome coronavirus 2Acute respiratory syndrome coronavirus 2A virusContribution of climate change to the spatial expansion of West Nile virus in Europe
Erazo D, Grant L, Ghisbain G, Marini G, Colón-González F, Wint W, Rizzoli A, Van Bortel W, Vogels C, Grubaugh N, Mengel M, Frieler K, Thiery W, Dellicour S. Contribution of climate change to the spatial expansion of West Nile virus in Europe. Nature Communications 2024, 15: 1196. PMID: 38331945, PMCID: PMC10853512, DOI: 10.1038/s41467-024-45290-3.Peer-Reviewed Original ResearchCitationsAltmetricMeSH Keywords and ConceptsConceptsWest Nile virusEcological niche modelsExpansion of West Nile virusClimate changeWNV circulationNiche modelsNile virusMosquito-borne pathogensEffects of climate changeHuman population changeSpatial expansionContributions of climate changeWest Nile virus circulationEnvironmental changesPublic health threatHuman populationLand-useHuman influencePotential driversRisk of exposureLong-term trendsPopulation densityPopulation changeHealth threatClimateEarly Release - Introduction and Spread of Dengue Virus 3, Florida, USA, May 2022–April 2023 - Volume 30, Number 2—February 2024 - Emerging Infectious Diseases journal - CDC
Jones F, Morrison A, Santiago G, Rysava K, Zimler R, Heberlein L, Kopp E, , Saunders K, Baudin S, Rico E, Mejía-Echeverri Á, Taylor-Salmon E, Hill V, Breban M, Vogels C, Grubaugh N, Paul L, Michael S, Johansson M, Adams L, Munoz-Jordan J, Paz-Bailey G, Stanek D. Early Release - Introduction and Spread of Dengue Virus 3, Florida, USA, May 2022–April 2023 - Volume 30, Number 2—February 2024 - Emerging Infectious Diseases journal - CDC. Emerging Infectious Diseases 2024, 30: 376-379. PMID: 38232709, PMCID: PMC10826764, DOI: 10.3201/eid3002.231615.Peer-Reviewed Original ResearchCitationsAltmetricMeSH Keywords and Concepts
2023
Genomic epidemiology of West Nile virus in Europe
Koch R, Erazo D, Folly A, Johnson N, Dellicour S, Grubaugh N, Vogels C. Genomic epidemiology of West Nile virus in Europe. One Health 2023, 18: 100664. PMID: 38193029, PMCID: PMC10772404, DOI: 10.1016/j.onehlt.2023.100664.Peer-Reviewed Original ResearchCitationsAltmetric
Academic Achievements & Community Involvement
activity European Society for Vector Ecology
Professional OrganizationsBoard MemberDetails10/25/2017 - Presentactivity American Society for Tropical Medicine and Hygiene
Professional OrganizationsMemberDetails11/01/2018 - Presentactivity Marina van Damme Network
Professional OrganizationsBoard MemberDetails2020 - 2024honor COVID-19 Team Research Award
Yale University AwardYale School of Public HealthDetails05/13/2022United Statesactivity Yale Postdoctoral Association
Professional OrganizationsCoordinatorDetails2019 - 2020
News
News
- September 19, 2024Source: NBC News
Fall is approaching, but mosquito season isn't over
- August 30, 2024Source: Everyday Health
Sloth Fever (Oropouche Virus) Comes to the U.S.
- August 29, 2024Source: ABC News
What you need to know about 'sloth fever' after 21 cases confirmed among US travelers
- August 16, 2024
The science behind the latest mpox global health emergency
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Epidemiology of Microbial Diseases
60 College Street
New Haven, CT 06510
United States