2024
Microbial transformation of dietary xenobiotics shapes gut microbiome composition
Culp E, Nelson N, Verdegaal A, Goodman A. Microbial transformation of dietary xenobiotics shapes gut microbiome composition. Cell 2024, 187: 6327-6345.e20. PMID: 39321800, PMCID: PMC11531382, DOI: 10.1016/j.cell.2024.08.038.Peer-Reviewed Original ResearchGut microbiomeHuman gut microbesGut microbiome compositionDiet-microbiome interactionsGut microbesCommunity compositionMicrobiome compositionMicrobial metabolismResponse to dietInterindividual variationMicrobiomeDietary xenobioticsMap interactionsGutMetabolic activityEnzymeXenobioticsDetoxificationGenesMicrobesResveratrolRemodelingTraitsInteractionVariation
2013
Experimental Approaches for Defining Functional Roles of Microbes in the Human Gut
Dantas G, Sommer MO, Degnan PH, Goodman AL. Experimental Approaches for Defining Functional Roles of Microbes in the Human Gut. Annual Review Of Microbiology 2013, 67: 459-475. PMID: 24024637, PMCID: PMC4718711, DOI: 10.1146/annurev-micro-092412-155642.Peer-Reviewed Original ResearchConceptsMicrobial communitiesFree-living microbial communitiesHigh-throughput DNA sequencingCulture-independent surveysGenome sequence projectHuman gutHost-microbe interactionsGut microbial communityMicrobial genomesGene contentMicrobial genesModel organismsHost-microbiota relationshipFunctional roleDNA sequencingFunction strategyModel systemExperimental approachUnderlying mechanismGenomeGutGenesMicrobesOrganismsSpecies
2007
Modulation of Bacterial Lifestyles via Two-Component Regulatory Networks
Ventre I, Goodman A, Filloux A, Lory S. Modulation of Bacterial Lifestyles via Two-Component Regulatory Networks. 2007, 311-340. DOI: 10.1007/978-1-4020-6097-7_11.Peer-Reviewed Reviews, Practice Guidelines, Standards, and Consensus StatementsRegulatory networksBreadth of environmentsComplex multicellular developmentHuman pathogen Helicobacter pyloriExpression of thousandsPathogen Helicobacter pyloriMulticellular developmentBacterial lifestyleAbility of bacteriaSpecies occupiesGene regulationSpecific habitatsMyxococcus xanthusLarge coding capacityCoding capacityGenomeRegulationXanthusHabitatsTransductionGenesSpeciesBacteriumBacteriaDifferentiation