2021
Community context matters for bacteria-phage ecology and evolution
Blazanin M, Turner P. Community context matters for bacteria-phage ecology and evolution. The ISME Journal: Multidisciplinary Journal Of Microbial Ecology 2021, 15: 3119-3128. PMID: 34127803, PMCID: PMC8528888, DOI: 10.1038/s41396-021-01012-x.Peer-Reviewed Original ResearchConceptsBacteria-phage systemsEvolutionary effectsBacteria-phage coevolutionValuable biological modelUnderstanding of bacteriaAdditional bacterial speciesMechanisms of adaptationEcological interactionsPleiotropic consequencesComplex communitiesCoevolutionary dynamicsBacterial speciesEcologyPhagesBacteriaBiological modelsSymbiosesCoevolutionCommunity contextSpeciesEvolutionMultispeciesCommunityAdaptationCommunity presence
2013
STOCHASTIC TEMPERATURES IMPEDE RNA VIRUS ADAPTATION
Alto BW, Wasik BR, Morales NM, Turner PE. STOCHASTIC TEMPERATURES IMPEDE RNA VIRUS ADAPTATION. Evolution 2013, 67: 969-979. PMID: 23550749, DOI: 10.1111/evo.12034.Peer-Reviewed Original ResearchConceptsFitness gainsVesicular stomatitis virusEvolution of generalistsConvergent molecular evolutionEvolution of specializationCell-binding proteinsMolecular evolutionGenome substitutionsConstant environmentVirus adaptationSequence analysisRNA virusesG geneVirus populationsStomatitis virusMolecular changesLineagesGeneralistsTemperature treatmentKey roleEvolutionGenesLociVirusProtein
2007
EVOLUTION OF HOST SPECIFICITY DRIVES REPRODUCTIVE ISOLATION AMONG RNA VIRUSES
Duffy S, Burch CL, Turner PE. EVOLUTION OF HOST SPECIFICITY DRIVES REPRODUCTIVE ISOLATION AMONG RNA VIRUSES. Evolution 2007, 61: 2614-2622. PMID: 17908251, PMCID: PMC7202233, DOI: 10.1111/j.1558-5646.2007.00226.x.Peer-Reviewed Original ResearchConceptsReproductive isolationEcological speciation hypothesisDivergent natural selectionRNA virusesAssortative mating evolvesNatural selectionHost rangeRNA bacteriophage phi6Speciation hypothesisSingle nucleotide changePhytophagous insectsEcological adaptationNovel hostEvolutionary fateWhole-genome sequencingGenetic exchangeImportant traitsBiological credibilityAlternative hostsExperimental populationsLaboratory populationsAssortative matingDirect selectionGenome sequencingNucleotide changes
2006
Pleiotropic Costs of Niche Expansion in the RNA Bacteriophage Φ6
Duffy S, Turner PE, Burch CL. Pleiotropic Costs of Niche Expansion in the RNA Bacteriophage Φ6. Genetics 2006, 172: 751-757. PMID: 16299384, PMCID: PMC1456241, DOI: 10.1534/genetics.105.051136.Peer-Reviewed Original ResearchMeSH KeywordsAdaptation, PhysiologicalAmino Acid SubstitutionBacteriophage phi 6Epigenesis, GeneticMolecular Sequence DataPseudomonas pseudoalcaligenesPseudomonas syringaeConceptsNiche expansionAntagonistic pleiotropyCosts of generalismVaried ecological conditionsRNA virus phi6Standard laboratory hostRNA bacteriophage φ6Host range mutantsPleiotropic costsHost shiftsPseudomonas hostsFitness costsGenetic basisGenetic dataHost attachmentHost rangeExperimental model systemAdaptive mutationsHost typeNonsynonymous mutationsEcological conditionsOriginal hostRNA virusesBacteriophage Φ6Generalism
2004
Reduced fecundity is the cost of cheating in RNA virus 6
Dennehy J, Turner P. Reduced fecundity is the cost of cheating in RNA virus 6. Proceedings Of The Royal Society B 2004, 271: 2275-2282. PMID: 15539353, PMCID: PMC1691856, DOI: 10.1098/rspb.2004.2833.Peer-Reviewed Original ResearchMeSH KeywordsAdaptation, PhysiologicalAttachment Sites, MicrobiologicalBacteriophage phi 6Biological EvolutionFertilityLogistic ModelsPhenotypePseudomonasVirus ReplicationConceptsHost fitnessTiming of reproductionRNA bacteriophage phi6Costs of cheatingLytic growth cycleSmall burst sizeDispersal stageInterference competitionLifetime fecundityIntracellular resourcesLife historyHigher fitnessEvolved virusesReduced fecunditySolo infectionsBacteriophage phi6FecundityLytic infectionGrowth cycleAncestorBurst sizeFitnessLatent periodCheatersMultiple viruses
2000
The Two Faces of Mutation: Extinction and Adaptation in RNA Viruses
Elena S, Miralles R, Cuevas J, Turner P, Moya A. The Two Faces of Mutation: Extinction and Adaptation in RNA Viruses. IUBMB Life 2000, 49: 5-9. PMID: 10772334, DOI: 10.1080/713803585.Peer-Reviewed Original ResearchMeSH KeywordsAdaptation, PhysiologicalEvolution, MolecularGene FrequencyModels, GeneticMutationPoint MutationRecombination, GeneticRNA VirusesSelection, GeneticVirus ReplicationConceptsRNA virusesPopulation sizeGenetic variabilityDrastic fitness lossFace of mutationCellular DNA replicationHigh genetic variabilityEffects of mutationsLarge population sizesViral population sizeBottleneck eventsGenetic driftFitness lossDNA replicationFitness gainsSegment exchangeDifferent tissuesViral extinctionReplicative intermediatesInfected hostExtinctionMutationsPopulation standpointHostReplication
1998
Sex and the Evolution of Intrahost Competition in RNA Virus φ6
Turner P, Chao L. Sex and the Evolution of Intrahost Competition in RNA Virus φ6. Genetics 1998, 150: 523-532. PMID: 9755186, PMCID: PMC1460345, DOI: 10.1093/genetics/150.2.523.Peer-Reviewed Original ResearchMeSH KeywordsAdaptation, PhysiologicalBacteriophage phi 6Biological EvolutionPseudomonasReproductionSexConceptsIntrahost competitionLarge sexual populationsLarge asexual populationsRNA virus phi6Absence of sexSame host cellRate of adaptationSexual populationsGenetic conflictSexual reproductionAsexual populationsMore rapid adaptationBeneficial mutationsSame genomeSeparate lineagesExperimental populationsBacterial hostsMultiple bacteriophagesAbility of virusesHost cellsRNA virusesRapid adaptationPseudomonas phaseolicolaPhi6Host