2005
A Digital Atlas to Characterize the Mouse Brain Transcriptome
Carson JP, Ju T, Lu HC, Thaller C, Xu M, Pallas SL, Crair MC, Warren J, Chiu W, Eichele G. A Digital Atlas to Characterize the Mouse Brain Transcriptome. PLOS Computational Biology 2005, 1: e41. PMID: 16184189, PMCID: PMC1215388, DOI: 10.1371/journal.pcbi.0010041.Peer-Reviewed Original ResearchConceptsDigital atlasUser queriesQuery patternsAnnotation methodData modalitiesMassive amountsTypes of dataExpression patternsMouse brain transcriptomeGene expression patternsComputational methodsCommon framePostnatal mouse brainBrain transcriptomeQueriesCandidate genesComplex tissuesCellular resolutionGenesDistinct developmental programs require different levels of Bmp signaling during mouse retinal development
Murali D, Yoshikawa S, Corrigan RR, Plas DJ, Crair MC, Oliver G, Lyons KM, Mishina Y, Furuta Y. Distinct developmental programs require different levels of Bmp signaling during mouse retinal development. Development 2005, 132: 913-923. PMID: 15673568, DOI: 10.1242/dev.01673.Peer-Reviewed Original ResearchMeSH KeywordsAnimalsBody PatterningBone Morphogenetic Protein Receptors, Type IBone Morphogenetic ProteinsCell ProliferationChromosome MappingFibroblast Growth FactorsGene Expression Regulation, DevelopmentalImmunohistochemistryIn Situ HybridizationMiceMice, TransgenicModels, BiologicalModels, GeneticMutationNeuronsOptic NerveProtein Serine-Threonine KinasesReceptors, Growth FactorRetinaSignal TransductionTransgenesConceptsDistinct developmental programsDevelopmental programRetinal developmentBMP receptor activityReceptor geneCell-autonomous requirementCre-loxP strategySevere eye defectsDirect genetic evidenceEmbryonic tissue interactionsMouse retinal developmentEye abnormalitiesMutant backgroundDorsoventral patterningMouse retinaReceptor activityDouble mutantReceptor functionEmbryonic retinaBMP familyRedundant rolesRetinal neurogenesisFunctional copyEmbryonic developmentGenetic evidence
2004
Adenylate Cyclase 1 dependent refinement of retinotopic maps in the mouse
Plas DT, Visel A, Gonzalez E, She WC, Crair MC. Adenylate Cyclase 1 dependent refinement of retinotopic maps in the mouse. Vision Research 2004, 44: 3357-3364. PMID: 15536003, DOI: 10.1016/j.visres.2004.09.036.Peer-Reviewed Original ResearchConceptsAdenylate cyclase 1Retino-collicular pathwayTopographic map refinementActivity-dependent factorsSuperior colliculusRetinotopic mapMutant miceSensory peripheryCellular mechanismsCyclase 1Superficial layersColliculusNeuronal mapsMiceGross topographyLittle evidenceDependent factorsMap refinementBiochemical techniques
1999
The Nuclear Orphan Receptor COUP-TFI Is Required for Differentiation of Subplate Neurons and Guidance of Thalamocortical Axons
Zhou C, Qiu Y, Pereira F, Crair M, Tsai S, Tsai M. The Nuclear Orphan Receptor COUP-TFI Is Required for Differentiation of Subplate Neurons and Guidance of Thalamocortical Axons. Neuron 1999, 24: 847-859. PMID: 10624948, DOI: 10.1016/s0896-6273(00)81032-6.Peer-Reviewed Original ResearchMeSH KeywordsAnimalsAntimetabolitesAxonsBromodeoxyuridineCarbocyaninesCell DeathCell DifferentiationCerebral CortexCOUP Transcription Factor IDNA-Binding ProteinsFluorescent DyesImmunohistochemistryIn Situ HybridizationMaleMiceMutationNeural PathwaysNeuronsReceptors, GlucocorticoidThalamusTranscription FactorsConceptsSubplate neuronsThalamocortical projectionsCortical layer IVLayer IV neuronsCell deathCorticothalamic connectivityAfferent innervationCerebral cortexThalamocortical axonsLayer IVNervous systemExcessive cell deathFactor INeuronal developmentNeuronsNuclear receptorsPremature cell deathInnervationImproper differentiationImportant regulatorOrphan memberDeathCritical roleDifferentiationFailure