2024
A FAIR, open-source virtual reality platform for dendritic spine analysis
Reimer M, Kauer S, Benson C, King J, Patwa S, Feng S, Estacion M, Bangalore L, Waxman S, Tan A. A FAIR, open-source virtual reality platform for dendritic spine analysis. Patterns 2024, 5: 101041. PMID: 39568639, PMCID: PMC11573899, DOI: 10.1016/j.patter.2024.101041.Peer-Reviewed Original ResearchVirtual realityVirtual reality platformSoftware ecosystemReality platformData standardSuperior accuracyDatasetWorkflowValidation processDendritic spine morphologySpine analysisDendritic spinesReconstruction techniqueSpine lengthMethod's superior accuracyDendritic spine lengthSpine morphologyMetricsMorphological metricsNeurodataFairness
2020
Core principles for the implementation of the neurodata without borders data standard
Reimer ML, Bangalore L, Waxman SG, Tan AM. Core principles for the implementation of the neurodata without borders data standard. Journal Of Neuroscience Methods 2020, 348: 108972. PMID: 33157146, DOI: 10.1016/j.jneumeth.2020.108972.Peer-Reviewed Original ResearchConceptsBig data analyticsData standardsData analyticsDatabase interfaceJupyter notebooksBig data analytics applicationsData analytics applicationsData analytical capabilitiesNeurophysiology dataDatabase technologyDatabase operationsInternational Brain LaboratoryAnalytics applicationsData queryData integrityData sharingProcess transparencyExisting methodsDiverse modalitiesAnalyticsDesign principlesSingle formatNeurodataHistorical dataDiverse sources