2022
Cellular recovery after prolonged warm ischaemia of the whole body
Andrijevic D, Vrselja Z, Lysyy T, Zhang S, Skarica M, Spajic A, Dellal D, Thorn SL, Duckrow RB, Ma S, Duy PQ, Isiktas AU, Liang D, Li M, Kim SK, Daniele SG, Banu K, Perincheri S, Menon MC, Huttner A, Sheth KN, Gobeske KT, Tietjen GT, Zaveri HP, Latham SR, Sinusas AJ, Sestan N. Cellular recovery after prolonged warm ischaemia of the whole body. Nature 2022, 608: 405-412. PMID: 35922506, PMCID: PMC9518831, DOI: 10.1038/s41586-022-05016-1.Peer-Reviewed Original ResearchMeSH KeywordsAnimalsCell DeathCell SurvivalCytoprotectionGene Expression ProfilingIschemiaOrgan SpecificityPerfusionSwineWarm IschemiaConceptsSingle-nucleus transcriptomic analysesSpecific gene expression patternsCellular recoveryGene expression patternsCellular processesMammalian cellsTranscriptomic analysisLarge mammalsExpression patternsCellular repair processesCell deathComprehensive resourceUnderappreciated potentialPhysiological challengesTissue integrityRepair processSpecific changesPorcine brainMammalsOrgansMultiple organs
2018
Comprehensive transcriptome analysis of Sarcophaga peregrina, a forensically important fly species
Kim J, Lim H, Shin S, Cha H, Seo J, Kim S, Park S, Son G. Comprehensive transcriptome analysis of Sarcophaga peregrina, a forensically important fly species. Scientific Data 2018, 5: 180220. PMID: 30398471, PMCID: PMC6219405, DOI: 10.1038/sdata.2018.220.Peer-Reviewed Original ResearchMeSH KeywordsAnimalsForensic GeneticsGene Expression ProfilingHigh-Throughput Nucleotide SequencingMolecular Sequence AnnotationSarcophagidaeSequence Analysis, RNATranscriptomeConceptsGenome informationSarcophaga peregrinaFly speciesSequence informationS. peregrinaComprehensive transcriptome analysisPrecise sequence informationDe novo assemblyMinimal postmortem intervalImportant fly speciesPrimary sequence informationGene expression datasetsFunctional annotationGenome databaseNovo assemblyTranscriptome analysisGene OntologyKyoto EncyclopediaRaw readsRNA sequencingRNA transcriptsIllumina MiSeqExpression datasetsForensic importanceUnigenes