2024
Marginal interaction test for detecting interactions between genetic marker sets and environment in genome-wide studies
Shen L, Amei A, Liu B, Xu G, Liu Y, Oh E, Zhou X, Wang Z. Marginal interaction test for detecting interactions between genetic marker sets and environment in genome-wide studies. G3: Genes, Genomes, Genetics 2024, jkae263. PMID: 39538414, DOI: 10.1093/g3journal/jkae263.Peer-Reviewed Original ResearchGene-environment interactionsStudies of complex diseasesMulti-Ethnic Study of AtherosclerosisComplex diseasesGenetic marker setsGenome-wide analysisGenome-wide studiesHuman complex diseasesGene-alcohol interactionsMulti-Ethnic StudyGenetic main effectsStudy of AtherosclerosisSignal transduction pathwaysAssociated with hypertensionBlood pressureSystolic blood pressureGenetic markersEnvironmental factorsAlcohol intakeGenetic variantsTransduction pathwaysSurvival pathwaysMarker setsPathway analysisRare variantsDetecting time‐varying genetic effects in Alzheimer's disease using a longitudinal genome‐wide association studies model
Zhuang X, Xu G, Amei A, Cordes D, Wang Z, Oh E, Initiative F. Detecting time‐varying genetic effects in Alzheimer's disease using a longitudinal genome‐wide association studies model. Alzheimer's & Dementia Diagnosis Assessment & Disease Monitoring 2024, 16: e12597. PMID: 38855650, PMCID: PMC11157162, DOI: 10.1002/dad2.12597.Peer-Reviewed Original ResearchGenome-wide association studiesSingle nucleotide polymorphismsLongitudinal genome-wide association studiesGWAS modelsAssociation studiesGenetic effectsAlzheimer's diseaseSingle nucleotide polymorphism effectsNational Alzheimer's Coordinating Center dataAge-dependent genetic effectsImpairment statusProgression of Alzheimer's diseaseEffects of apoEAge-stratified analysesGenetic signalsGenetic lociNucleotide polymorphismsLongitudinal phenotypesPathway analysisInitiative participantsAmyloid accumulationAmyloidStandardized uptake value ratioCenter dataAmyloid positron emission tomography
2020
tRFtarget: a database for transfer RNA-derived fragment targets
Li N, Shan N, Lu L, Wang Z. tRFtarget: a database for transfer RNA-derived fragment targets. Nucleic Acids Research 2020, 49: d254-d260. PMID: 33035346, PMCID: PMC7779015, DOI: 10.1093/nar/gkaa831.Peer-Reviewed Original ResearchMeSH KeywordsAnimalsBase PairingBase SequenceCaenorhabditis elegansDatabases, Nucleic AcidDrosophila melanogasterGene OntologyHumansMiceMolecular Sequence AnnotationNucleic Acid ConformationNucleic Acid HybridizationRhodobacter sphaeroidesRNA, MessengerRNA, Small UntranslatedRNA, TransferSchizosaccharomycesThermodynamicsXenopusZebrafishConceptsTarget genesTransfer RNASmall non-coding RNAsGene Ontology annotationsNon-coding RNAsFunctional pathway analysisAccessible web-based databaseMolecular functionsOntology annotationsBiological functionsPathway analysisMolecular mechanismsPhysiological processesTarget predictionHuman diseasesGenesMRNA transcriptsRNAWeb-based databaseConvenient linkTRFImportant roleRNAhybridTargetIntaRNA