Satinder Kaur Singh, PhD
Cards
Appointments
Contact Info
Cellular & Molecular Physiology
211 East Ohio Street, Apt 1901
Chicago, IL 60611
United States
About
Titles
Associate Professor Adjunct
Biography
Satinder was born in Boston, MA and moved, as a teenager, to Minneapolis, MN, with her family. She received her doctoral degree in Biochemistry & Molecular Biophysics from the University of Minnesota – Twin Cities, supported by an HHMI Predoctoral Fellowship. She has had a long-standing interest in the molecular mechanisms of neuropsychiatric disease, particularly in the role that the biogenic amines play. As a postdoctoral fellow, she combined her knowledge of neuropsychopharmacology and enzymology with X-ray crystallography to develop molecular models of transport and inhibition for LeuT, a bacterial orthologue of neurotransmitter sodium symporters (NSS). At Yale, Satinder has been concentrating on eukaryotic NSS members, specifically those that transport the biogenic amines serotonin (SERT) and dopamine (DAT).
Appointments
Cellular & Molecular Physiology
Associate Professor AdjunctPrimary
Other Departments & Organizations
- Cellular & Molecular Physiology
- Structural Biology
- Yale Ventures
Education & Training
- Postdoctoral Fellow
- Oregon Health and Science University (2008)
- Postdoctoral Fellow
- Columbia University (2005)
- PhD
- University of Minnesota, Biochemistry, Molecular Biology, & Biophysics (2002)
- BS
- University of Minnesota, Biochemistry (1995)
Research
Overview
Signal transduction in the human brain is a complex, highly regulated process. The transmission and regulation of nerve impulses among neurons are mediated by a number of proteins, including ion channels, G-protein coupled receptors, protein kinases, protein phosphatases, and neurotransmitter transporters, to name only a few. Significantly, many of these proteins are the target of potent psychoactive substances and antiepileptic drugs. Furthermore, their dysfunction has been implicated in the development of multiple debilitating neuropsychiatric and neurological diseases such as obsessive-compulsive disorder (OCD), autism, depression, schizophrenia, Parkinson’s disease, Tourette’s syndrome, and epilepsy.
Little is known about the molecular basis of these illnesses, but their underlying neural circuitry is gradually being revealed by a combination of functional neuroimaging, genome-wide association, transgenics, optogenetics, and neuropsychopharmacology. For instance, in OCD, an illness marked by intense intrusive thoughts and ritualistic behavior, hyperactivity in the circuit connecting the orbitofrontal cortex, cingulate gyrus, striatum, and caudate nucleus (the orbitofrontal corticostriatal circuit) has been correlated with symptom severity (Graybiel & Rauch, 2000). These brain regions receive extensive input from serotonergic and dopaminergic neurons, and both serotonin and dopamine have been implicated in the pathogenesis of OCD. Indeed, some of more effective treatments for OCD target the serotonin transporter (SERT) and include the tricyclic antidepressant (TCA) clomipramine and a few of the selective serotonin reuptake inhibitors (SSRIs). Although prescribed less frequently, atypical antipsychotics (dopamine D2 / serotonin 5HT2a receptor antagonists) are used as augmenting agents in treatment refractory cases.
My lab seeks to ascertain how signaling proteins in these neural circuits function at the atomic level, how disease-associated polymorphisms disrupt activity and how therapeutic and illicit compounds exert their effects. To achieve our objectives, we employ a broad range of complementary biochemical and biophysical tools such as X-ray crystallography, steady-state flux/binding kinetics, nanodisc technology, and hydrogen-deuterium exchange mass spectrometry (HDX-MS).
We are presently focusing our efforts on the plasma membrane neurotransmitter transporters for the biogenic amines serotonin (SERT) and dopamine (DAT). These molecular machines work by coupling preexisting sodium and chloride electrochemical gradients to the energetically unfavorable movement of the respective neurotransmitter from the synaptic cleft back into neuronal and glial cytoplasms. Because they function primarily after neurotransmitters have been released from the presynaptic neuron and activated postsynaptic receptors, these integral membrane proteins play a crucial role in terminating synaptic transmission and thus in shaping the duration and magnitude of synaptic signaling.
We are examining the substrate/ion specificity of these symporters and the dynamic conformational changes that occur during the transport cycle. We are also attempting to pinpoint antagonist binding sites and to elucidate the atomic mechanism by which psychoactive substances such as TCAs, SSRIs, cocaine, and amphetamine, modulate transport. Our ultimate goal is to help pave the road toward rational, structure-based drug design efforts and to shed light on the molecular underpinnings of disease-associated polymorphisms and drug resistance.
Medical Research Interests
Research at a Glance
Publications Timeline
Research Interests
Protein Structure, Tertiary
Serotonin
Lipid Bilayers
Biogenic Monoamines
Dopamine
Publications
2019
A Novel Bromine-Containing Paroxetine Analogue Provides Mechanistic Clues for Binding Ambiguity at the Central Primary Binding Site of the Serotonin Transporter
Slack RD, Abramyan AM, Tang H, Meena S, Davis BA, Bonifazi A, Giancola JB, Deschamps JR, Naing S, Yano H, Singh SK, Newman AH, Shi L. A Novel Bromine-Containing Paroxetine Analogue Provides Mechanistic Clues for Binding Ambiguity at the Central Primary Binding Site of the Serotonin Transporter. ACS Chemical Neuroscience 2019, 10: 3946-3952. PMID: 31424193, PMCID: PMC8272913, DOI: 10.1021/acschemneuro.9b00375.Peer-Reviewed Original ResearchCitationsMeSH Keywords and Concepts
2018
Computation-guided analysis of paroxetine binding to hSERT reveals functionally important structural elements and dynamics
Abramyan AM, Slack RD, Meena S, Davis BA, Newman AH, Singh SK, Shi L. Computation-guided analysis of paroxetine binding to hSERT reveals functionally important structural elements and dynamics. Neuropharmacology 2018, 161: 107411. PMID: 30391505, PMCID: PMC6494725, DOI: 10.1016/j.neuropharm.2018.10.040.Peer-Reviewed Original ResearchCitationsMeSH Keywords and ConceptsNeurotransmitter Transporter Conformational Dynamics using HDX-MS and Molecular Dynamics Simulation
Bradshaw R, Nagarajan A, Adhikary S, Deredge D, Wintrode P, Singh S, Forrest L. Neurotransmitter Transporter Conformational Dynamics using HDX-MS and Molecular Dynamics Simulation. Biophysical Journal 2018, 114: 207a. DOI: 10.1016/j.bpj.2017.11.1161.Peer-Reviewed Original ResearchCitations
2017
Conformational dynamics of a neurotransmitter:sodium symporter in a lipid bilayer
Adhikary S, Deredge DJ, Nagarajan A, Forrest LR, Wintrode PL, Singh SK. Conformational dynamics of a neurotransmitter:sodium symporter in a lipid bilayer. Proceedings Of The National Academy Of Sciences Of The United States Of America 2017, 114: e1786-e1795. PMID: 28223522, PMCID: PMC5347597, DOI: 10.1073/pnas.1613293114.Peer-Reviewed Original ResearchCitationsAltmetricMeSH Keywords and ConceptsConceptsSodium symportersMembrane proteinsMammalian membrane proteinsConformational mechanismIntegral membrane proteinsPhospholipid bilayer nanodiscsSolution spectroscopyDetergent-solubilized stateExtracellular loop 2Site-specific labelingSmall molecule neurotransmittersBilayer nanodiscsHydrogen-deuterium exchangeX-ray crystallographyCysteine accessibilityConformational dynamicsMembrane mimicsMolecular dynamics simulationsLoop 2Endogenous cysteineHelices 1ALeuTLipid bilayersProteinSymporter
2016
Mechanism of Paroxetine (Paxil) Inhibition of the Serotonin Transporter
Davis BA, Nagarajan A, Forrest LR, Singh SK. Mechanism of Paroxetine (Paxil) Inhibition of the Serotonin Transporter. Scientific Reports 2016, 6: 23789. PMID: 27032980, PMCID: PMC4817154, DOI: 10.1038/srep23789.Peer-Reviewed Original ResearchCitationsAltmetricMeSH Keywords and ConceptsMeSH KeywordsAmino Acid SequenceAnimalsBinding SitesCells, CulturedChickensCocaineDopamine Plasma Membrane Transport ProteinsDrosophila melanogasterDrosophila ProteinsModels, MolecularMolecular ConformationMolecular Docking SimulationParoxetineProtein ConformationRadioligand AssaySelective Serotonin Reuptake InhibitorsSequence AlignmentSequence Homology, Amino AcidSerotoninSerotonin Plasma Membrane Transport ProteinsConceptsIntegral membrane proteinsDrosophila melanogaster dopamine transporterSERT homology modelMembrane proteinsSerotonin transporterMolecular insightsHomology modelIon gradientsFlux assaysTransportersSERT substratesPotassium ion gradientSignificant clinical attentionPresynaptic neuronsDopamine transporterProteinUnfavorable movementSitesSynaptic serotoninBindingSubstrateAssaysRadioligand bindingInhibitorsPotent selective serotonin reuptake inhibitor
2015
Cryo-EM: Spinning the Micelles Away
Singh SK, Sigworth FJ. Cryo-EM: Spinning the Micelles Away. Structure 2015, 23: 1561. PMID: 26331455, PMCID: PMC4901521, DOI: 10.1016/j.str.2015.08.001.Peer-Reviewed Original ResearchCitationsMeSH Keywords and ConceptsChapter Nine Biophysical Approaches to the Study of LeuT, a Prokaryotic Homolog of Neurotransmitter Sodium Symporters
Singh SK, Pal A. Chapter Nine Biophysical Approaches to the Study of LeuT, a Prokaryotic Homolog of Neurotransmitter Sodium Symporters. Methods In Enzymology 2015, 557: 167-198. PMID: 25950965, PMCID: PMC4818570, DOI: 10.1016/bs.mie.2015.01.002.Peer-Reviewed Original ResearchCitationsAltmetricMeSH Keywords and ConceptsConceptsMultiple integral membrane proteinsSolute carrier 6 (SLC6) familyNeurotransmitter sodium symportersIntegral membrane proteinsAmino acid symporterDependent neurotransmitter transportersEukaryotic counterpartsSodium symportersProkaryotic homologAcid symporterLeuT structureMembrane proteinsNeurotransmitter transportersBiophysical approachesLeuTHomology modelingMechanism of transportSecondary transportAmino acidsLipid bilayersSignificant transportersMechanistic paradigmMolecular dynamics simulationsSymporterProteinCarboxyl Residues Required for Transport by a Vesicular Monoamine Transporter Homolog from Brevibacillus Brevis (BbMAT)
Vergara-Jaque A, Yaffe D, Shuster Y, Listov D, Meena S, Singh S, Schuldiner S, Forrest L. Carboxyl Residues Required for Transport by a Vesicular Monoamine Transporter Homolog from Brevibacillus Brevis (BbMAT). Biophysical Journal 2015, 108: 462a. DOI: 10.1016/j.bpj.2014.11.2522.Peer-Reviewed Original Research
2014
Functionally Important Carboxyls in a Bacterial Homologue of the Vesicular Monoamine Transporter (VMAT)*
Yaffe D, Vergara-Jaque A, Shuster Y, Listov D, Meena S, Singh SK, Forrest LR, Schuldiner S. Functionally Important Carboxyls in a Bacterial Homologue of the Vesicular Monoamine Transporter (VMAT)*. Journal Of Biological Chemistry 2014, 289: 34229-34240. PMID: 25336661, PMCID: PMC4256354, DOI: 10.1074/jbc.m114.607366.Peer-Reviewed Original ResearchCitationsAltmetricMeSH Keywords and ConceptsMeSH KeywordsAmino Acid SequenceAnimalsArginineBacterial ProteinsBiogenic MonoaminesBrevibacillusCarrier ProteinsDrug Resistance, BacterialEscherichia coliEvolution, MolecularGene ExpressionHistidineModels, MolecularMolecular Sequence DataProtein FoldingRatsRecombinant ProteinsSequence AlignmentStructural Homology, ProteinStructure-Activity RelationshipSubstrate SpecificitySynaptic TransmissionVesicular Monoamine Transport ProteinsConceptsBacterial multidrug transportersMultidrug transporterBacterial homologueVesicular monoamine transporterRat vesicular monoamine transporterMonoamine transportersPreliminary biochemical characterizationMammalian transportersTransmembrane helicesMammalian counterpartsTransmembrane segmentsMammalian organismsEvolutionary aspectsMajor facilitatorBiochemical characterizationImportant carboxylB. brevisHomology modelBiochemical studiesTransportersHomologuesCarboxyl residuesAntibiotic resistanceOrganismsNeurotransportersStructure and Regulatory Interactions of the Cytoplasmic Terminal Domains of Serotonin Transporter
Fenollar-Ferrer C, Stockner T, Schwarz TC, Pal A, Gotovina J, Hofmaier T, Jayaraman K, Adhikary S, Kudlacek O, Mehdipour AR, Tavoulari S, Rudnick G, Singh SK, Konrat R, Sitte HH, Forrest LR. Structure and Regulatory Interactions of the Cytoplasmic Terminal Domains of Serotonin Transporter. Biochemistry 2014, 53: 5444-5460. PMID: 25093911, PMCID: PMC4147951, DOI: 10.1021/bi500637f.Peer-Reviewed Original ResearchCitationsMeSH Keywords and ConceptsMeSH KeywordsAmino Acid SequenceCircular DichroismCytoplasmFluorescence Resonance Energy TransferHumansMagnetic Resonance SpectroscopyModels, MolecularMolecular Sequence DataProtein ConformationProtein FoldingProtein Structure, SecondaryProtein Structure, TertiarySerotonin Plasma Membrane Transport ProteinsConceptsTerminal domainStructures of homologuesYellow fluorescent protein tagProtein-protein interactionsFluorescent protein tagsFluorescence resonance energy transfer signalN-terminal domainCarboxy-terminal endHelix-breaking residuesCyan fluorescent proteinEnergy transfer signalHuman serotonin transporterNSS familyConformational cycleCircular dichroism spectroscopyProtein tagsCytoplasmic segmentRegulatory interactionsTransmembrane regionUptake of neurotransmittersInteraction partnersRegulatory mechanismsSerotonin transporterBiophysical approachesFluorescent protein
Academic Achievements & Community Involvement
honor NARSAD Independent Investigator Award
International AwardBrain & Behavior FoundationDetails09/15/2015United Stateshonor Sloan Research Fellowship Award
National AwardAlfred P. Sloan FoundationDetails07/01/2012United Stateshonor Goodman & Gilman Yale Scholar Award
Yale University AwardYale University School of MedicineDetails07/01/2010United Stateshonor NIH/NIMH K99/R00 "Pathway to Independence Award"
National AwardNational Institutes of HealthDetails01/01/2008United Stateshonor NIH/NINDS Individual NRSA Postdoctoral Fellowship
National AwardNational Institutes of HealthDetails01/01/2003United States
News & Links
Media
- Conformational dynamics of LeuT, a neurotransmitter:sodium symporter, embedded in a nanoscale lipid bilayer (nanodisc), as assessed by hydrogen-deuterium exchange (HDX-MS) kinetics. LeuT is a prokaryotic homolog of the human dopamine and serotonin transporters, currently the primary protein targets of the lab. Individual figures from Adhikary et al, (2017) are overlaid onto an image of the synaptic cleft.
News
- January 09, 2020
Cellular and Molecular Physiology Annual Retreat 2019
- December 06, 2018
Cellular and Molecular Physiology Annual Retreat 2018
- October 02, 2017
Cellular and Molecular Physiology Annual Retreat 2017
- October 04, 2016
Cellular and Molecular Physiology Annual Retreat 2016
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Contacts
Cellular & Molecular Physiology
211 East Ohio Street, Apt 1901
Chicago, IL 60611
United States
Locations
Sterling Hall of Medicine, B-Wing
Academic Office
333 Cedar Street
New Haven, CT 06510
General Information
612.961.4948